RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 SPATA4Q8NEY3 305 aa6.99□□□□□ -1.29
NEK3-201ENST00000550331 LRRC46Q96FV0 321 aa6.99□□□□□ -1.29
NEK3-201ENST00000550331 JSRP1Q96MG2 331 aaPredicted RBP6.99□□□□□ -1.29
NEK3-201ENST00000550331 MTERF1Q99551 399 aaKnown RBP6.99□□□□□ -1.29
NEK3-201ENST00000550331 POLDIP3Q9BY77 421 aaKnown RBP6.99□□□□□ -1.29
NEK3-201ENST00000550331 SLC6A15Q9H2J7 730 aa6.99□□□□□ -1.29
NEK3-201ENST00000550331 CLEC4MQ9H2X3 399 aaPredicted RBP6.99□□□□□ -1.29
NEK3-201ENST00000550331 WDR41Q9HAD4 459 aa6.99□□□□□ -1.29
NEK3-201ENST00000550331 GRPEL1Q9HAV7 217 aa6.99□□□□□ -1.29
NEK3-201ENST00000550331 DLL4Q9NR61 685 aa6.99□□□□□ -1.29
NEK3-201ENST00000550331 SNX15Q9NRS6 342 aa6.99□□□□□ -1.29
NEK3-201ENST00000550331 RASSF1Q9NS23 344 aa6.99□□□□□ -1.29
NEK3-201ENST00000550331 DNAJB12Q9NXW2 375 aaKnown RBP6.99□□□□□ -1.29
NEK3-201ENST00000550331 ALKBH4Q9NXW9 302 aa6.99□□□□□ -1.29
NEK3-201ENST00000550331 ZNF629Q9UEG4 869 aaPredicted RBP6.99□□□□□ -1.29
NEK3-201ENST00000550331 FOXD3Q9UJU5 478 aaPredicted RBP6.99□□□□□ -1.29
NEK3-201ENST00000550331 RPH3AQ9Y2J0 694 aaPredicted RBP6.99□□□□□ -1.29
NEK3-201ENST00000550331 ACOT9Q9Y305 439 aa6.99□□□□□ -1.29
NEK3-201ENST00000550331 TNPO3Q9Y5L0 923 aaKnown RBP6.99□□□□□ -1.29
NEK3-201ENST00000550331 SCN3AQ9NY46 2000 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 C15orf38-AP3S2A0A0A6YYH1 394 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 C2orf92A0A1B0GVN3 265 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 ADARB2-AS1A8MUL3 147 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 TP53I11O14683 189 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 RAD51CO43502 376 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 CDH16O75309 829 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 EEDO75530 441 aaKnown RBP6.98□□□□□ -1.29
NEK3-201ENST00000550331 AIFM1O95831 613 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 EPPINO95925 133 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 HPNP05981 417 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 C2P06681 752 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 FAM58BPP0C7Q3 252 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 GFAPP14136 432 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 UQCRC1P31930 480 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 CEACAM8P31997 349 aaPredicted RBP6.98□□□□□ -1.29
NEK3-201ENST00000550331 BSGP35613 385 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 MAGEA4P43358 317 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 CDK9P50750 372 aaKnown RBP6.98□□□□□ -1.29
NEK3-201ENST00000550331 GP2P55259 537 aaKnown RBP6.98□□□□□ -1.29
NEK3-201ENST00000550331 RPP38P78345 283 aaKnown RBP6.98□□□□□ -1.29
NEK3-201ENST00000550331 CRYZQ08257 329 aaKnown RBP6.98□□□□□ -1.29
NEK3-201ENST00000550331 FUT7Q11130 342 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 ACAP2Q15057 778 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 PCBP2Q15366 365 aaKnown RBP eCLIP6.98□□□□□ -1.29
NEK3-201ENST00000550331 CPSF6Q16630 551 aaKnown RBP eCLIP6.98□□□□□ -1.29
NEK3-201ENST00000550331 PFKFB4Q16877 469 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 FLYWCH1Q4VC44 716 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 NHSL2Q5HYW2 709 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 HLA-DQA1Q5Y7H0 255 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 TMEM198Q66K66 360 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 KLC3Q6P597 504 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 SEM1Q6ZVN7 128 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 GALNT12Q8IXK2 581 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 CENPLQ8N0S6 344 aaPredicted RBP6.98□□□□□ -1.29
NEK3-201ENST00000550331 RNF175Q8N4F7 328 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 L3MBTL4Q8NA19 623 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 RELL2Q8NC24 303 aaPredicted RBP6.98□□□□□ -1.29
NEK3-201ENST00000550331 NAXEQ8NCW5 288 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 C17orf47Q8NEP4 570 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 WDR20Q8TBZ3 569 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 SPPL2AQ8TCT8 520 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 FBF1Q8TES7 1133 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 FAM222BQ8WU58 562 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 KCTD4Q8WVF5 259 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 DIO2Q92813 273 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 RNASE6Q93091 150 aaKnown RBP6.98□□□□□ -1.29
NEK3-201ENST00000550331 NXNL1Q96CM4 212 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 NTNG2Q96CW9 530 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 RMND5BQ96G75 393 aaPredicted RBP6.98□□□□□ -1.29
NEK3-201ENST00000550331 TMEM41AQ96HV5 264 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 SERPINI1Q99574 410 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 TIMP4Q99727 224 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 SH3GL2Q99962 352 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 ANGPTL4Q9BY76 406 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 PRDM14Q9GZV8 571 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 RAB17Q9H0T7 212 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 UBQLN3Q9H347 655 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 IPPKQ9H8X2 491 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 CXorf21Q9HAI6 301 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 ZNF358Q9NW07 568 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 MTRF1LQ9UGC7 380 aaKnown RBP6.98□□□□□ -1.29
NEK3-201ENST00000550331 ST6GALNAC2Q9UJ37 374 aa6.98□□□□□ -1.29
NEK3-201ENST00000550331 UTP11Q9Y3A2 253 aaKnown RBP6.98□□□□□ -1.29
NEK3-201ENST00000550331 FN1P02751 2386 aaKnown RBP6.98□□□□□ -1.29
NEK3-201ENST00000550331 CD8B2A6NJW9 211 aa6.97□□□□□ -1.29
NEK3-201ENST00000550331 GLOD5A6NK44 160 aa6.97□□□□□ -1.29
NEK3-201ENST00000550331 A6NNC1 897 aa6.97□□□□□ -1.29
NEK3-201ENST00000550331 WASHC1A8K0Z3 465 aa6.97□□□□□ -1.29
NEK3-201ENST00000550331 KLHL2O95198 593 aa6.97□□□□□ -1.29
NEK3-201ENST00000550331 LRATO95237 230 aa6.97□□□□□ -1.29
NEK3-201ENST00000550331 GOSR1O95249 250 aa6.97□□□□□ -1.29
NEK3-201ENST00000550331 BMP5P22003 454 aa6.97□□□□□ -1.29
NEK3-201ENST00000550331 DNASE1P24855 282 aa6.97□□□□□ -1.29
NEK3-201ENST00000550331 PIK3R1P27986 724 aa6.97□□□□□ -1.29
NEK3-201ENST00000550331 MASP1P48740 699 aa6.97□□□□□ -1.29
NEK3-201ENST00000550331 TRPC1P48995 793 aa6.97□□□□□ -1.29
NEK3-201ENST00000550331 PLTPP55058 493 aa6.97□□□□□ -1.29
NEK3-201ENST00000550331 NRG3P56975 720 aa6.97□□□□□ -1.29
NEK3-201ENST00000550331 FBXW4P57775 412 aa6.97□□□□□ -1.29
NEK3-201ENST00000550331 IRF9Q00978 393 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms