RNA–Protein interactions for RNA: ENST00000542838.5

DDX11-223, Transcript of DEAD/H-box helicase 11, human

APPRIS P1 TSL 1 (best) BASIC

Gene DDX11, Length 3,079 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX11-223	ENST00000542838	ZC3HAV1L	Q96H79	300 aa	Known RBP	12.21	□□□□□ -0.45
DDX11-223	ENST00000542838	PPP1R16A	Q96I34	528 aa		12.21	□□□□□ -0.45
DDX11-223	ENST00000542838	NECTIN4	Q96NY8	510 aa		12.21	□□□□□ -0.45
DDX11-223	ENST00000542838	PLA2G12A	Q9BZM1	189 aa		12.21	□□□□□ -0.45
DDX11-223	ENST00000542838	SERHL2	Q9H4I8	314 aa		12.21	□□□□□ -0.45
DDX11-223	ENST00000542838	EGLN3	Q9H6Z9	239 aa		12.21	□□□□□ -0.45
DDX11-223	ENST00000542838	P2RX2	Q9UBL9	471 aa		12.21	□□□□□ -0.45
DDX11-223	ENST00000542838	TRPC4	Q9UBN4	977 aa		12.21	□□□□□ -0.45
DDX11-223	ENST00000542838	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	12.21	□□□□□ -0.45
DDX11-223	ENST00000542838	PRAMEF27	A3QJZ7	478 aa		12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	PRODH	O43272	600 aa		12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	LYRM1	O43325	122 aa		12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	PROM1	O43490	865 aa		12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	HLA-DQB1	P01920	261 aa		12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	CD79B	P40259	229 aa		12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	INPP1	P49441	399 aa		12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	EFNB1	P98172	346 aa		12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	GRIN2C	Q14957	1233 aa		12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	KIAA1211L	Q6NV74	962 aa		12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	TMC8	Q8IU68	726 aa		12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	TBC1D19	Q8N5T2	526 aa		12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	TMEM145	Q8NBT3	493 aa		12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	SETD7	Q8WTS6	366 aa	Known RBP	12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	DEDD2	Q8WXF8	326 aa		12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	FGF11	Q92914	225 aa		12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	CITED4	Q96RK1	184 aa		12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	OR51I1	Q9H343	314 aa		12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	TRIM45	Q9H8W5	580 aa	Predicted RBP	12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	KCNK12	Q9HB15	430 aa		12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	ISYNA1	Q9NPH2	558 aa		12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	CLCA2	Q9UQC9	943 aa		12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	EXOSC1	Q9Y3B2	195 aa	Known RBP	12.21	□□□□□ -0.46
DDX11-223	ENST00000542838	IRGM	A1A4Y4	181 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	SNTN	A6NMZ2	147 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	TEX28	O15482	410 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	TRIM3	O75382	744 aa	Predicted RBP	12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	NCR1	O76036	304 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	C1QB	P02746	253 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	SOX18	P35713	384 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	MTNR1A	P48039	350 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	KHDRBS2	Q5VWX1	349 aa	Known RBP	12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	TMEM215	Q68D42	235 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	C1orf94	Q6P1W5	598 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	KIF18B	Q86Y91	864 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	DUSP18	Q8NEJ0	188 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	ZNF558	Q96NG5	402 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	ZNF717	Q9BY31	904 aa	Predicted RBP	12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	B3GAT2	Q9NPZ5	323 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	MAN2C1	Q9NTJ4	1040 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	MRPS18A	Q9NVS2	196 aa	Known RBP	12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	ING3	Q9NXR8	418 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	IL36A	Q9UHA7	158 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	SLC9A8	Q9Y2E8	581 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	PCDHGB7	Q9Y5F8	929 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	TBX6	O95947	436 aa	Predicted RBP	12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	LRG1	P02750	347 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	FGF9	P31371	208 aa	Predicted RBP	12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	PCBP4	P57723	403 aa	Known RBP	12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	SNRPD2	P62316	118 aa	Known RBP	12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	TLE2	Q04725	743 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	BTBD16	Q32M84	506 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	ZNF805	Q5CZA5	627 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	LHFPL3	Q86UP9	236 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	FAM129C	Q86XR2	697 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	SLC39A11	Q8N1S5	342 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	LINC00471	Q8N535	108 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	NATD1	Q8N6N6	113 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	OR6T1	Q8NGN1	323 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	TEX47	Q8TBZ9	253 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	UPRT	Q96BW1	309 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	OTUB1	Q96FW1	271 aa	Predicted RBP	12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	SLC35G5	Q96KT7	338 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	ATF6B	Q99941	703 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	SOST	Q9BQB4	213 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	ARHGAP9	Q9BRR9	750 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	TMED9	Q9BVK6	235 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	SAP130	Q9H0E3	1048 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	NIPAL2	Q9H841	368 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	TBC1D17	Q9HA65	648 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838	DKK3	Q9UBP4	350 aa		12.2	□□□□□ -0.46
DDX11-223	ENST00000542838		A0A0X1KG70	313 aa		12.19	□□□□□ -0.46
DDX11-223	ENST00000542838	TSPAN11	A1L157	253 aa		12.19	□□□□□ -0.46
DDX11-223	ENST00000542838	AKR7A2	O43488	359 aa		12.19	□□□□□ -0.46
DDX11-223	ENST00000542838	LIMS3	P0CW19	117 aa		12.19	□□□□□ -0.46
DDX11-223	ENST00000542838	LIMS4	P0CW20	117 aa		12.19	□□□□□ -0.46
DDX11-223	ENST00000542838	BSG	P35613	385 aa		12.19	□□□□□ -0.46
DDX11-223	ENST00000542838	MMP12	P39900	470 aa		12.19	□□□□□ -0.46
DDX11-223	ENST00000542838	P2RX3	P56373	397 aa		12.19	□□□□□ -0.46
DDX11-223	ENST00000542838	CLDN20	P56880	219 aa		12.19	□□□□□ -0.46
DDX11-223	ENST00000542838	TNK1	Q13470	666 aa		12.19	□□□□□ -0.46
DDX11-223	ENST00000542838	DUSP6	Q16828	381 aa		12.19	□□□□□ -0.46
DDX11-223	ENST00000542838	LHX8	Q68G74	356 aa		12.19	□□□□□ -0.46
DDX11-223	ENST00000542838	MARCH9	Q86YJ5	346 aa		12.19	□□□□□ -0.46
DDX11-223	ENST00000542838	ZNF366	Q8N895	744 aa		12.19	□□□□□ -0.46
DDX11-223	ENST00000542838	ZNF557	Q8N988	423 aa	Predicted RBP	12.19	□□□□□ -0.46
DDX11-223	ENST00000542838	MORN4	Q8NDC4	146 aa		12.19	□□□□□ -0.46
DDX11-223	ENST00000542838	ANKK1	Q8NFD2	765 aa		12.19	□□□□□ -0.46
DDX11-223	ENST00000542838	VN1R2	Q8NFZ6	395 aa		12.19	□□□□□ -0.46
DDX11-223	ENST00000542838	GFM1	Q96RP9	751 aa	Known RBP	12.19	□□□□□ -0.46
DDX11-223	ENST00000542838	HDHD5	Q9BXW7	423 aa		12.19	□□□□□ -0.46

Retrieved 100 of 20,778 RNA–protein pairs in 33 ms