RNA–Protein interactions for RNA: ENST00000533979.5

ATM-223, Transcript of ATM serine/threonine kinase, human

TSL 3

Gene ATM, Length 705 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATM-223	ENST00000533979	TMCO5B	A8MYB1	307 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	C16orf97	H3BN30	126 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	P2RY10	O00398	339 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	DNALI1	O14645	258 aa	Predicted RBP	4.16	□□□□□ -1.74
ATM-223	ENST00000533979	FGF17	O60258	216 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	ECE2	O60344	883 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	SDC3	O75056	442 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	MTRF1	O75570	445 aa	Known RBP	4.16	□□□□□ -1.74
ATM-223	ENST00000533979	UFL1	O94874	794 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	SLITRK3	O94933	977 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	MBD3	O95983	291 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	EPO	P01588	193 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	MT-ND1	P03886	318 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	CT45A8	P0DMV1	189 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	CT45A9	P0DMV2	189 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	ODC1	P11926	461 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	CCDC130	P13994	396 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	CKMT2	P17540	419 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	GJB2	P29033	226 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	SFTPD	P35247	375 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	THOP1	P52888	689 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	SUCLG1	P53597	346 aa	Known RBP	4.16	□□□□□ -1.74
ATM-223	ENST00000533979	PRMT2	P55345	433 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	SP3	Q02447	781 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	SELPLG	Q14242	412 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	SPHAR	Q15513	63 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	TRIP10	Q15642	601 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	MRGPRG-AS1	Q2M3A8	158 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	ZNF528	Q3MIS6	628 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	CT45A2	Q5DJT8	189 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	ZNF542P	Q5EBM4	170 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	NDUFAF5	Q5TEU4	345 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	HIST2H2AA3	Q6FI13	130 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	NANOGNB	Q7Z5D8	188 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	TMEM139	Q8IV31	216 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	PSTK	Q8IV42	348 aa	Known RBP	4.16	□□□□□ -1.74
ATM-223	ENST00000533979	PHC2	Q8IXK0	858 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	SLC43A2	Q8N370	569 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	METTL27	Q8N6F8	245 aa	Predicted RBP	4.16	□□□□□ -1.74
ATM-223	ENST00000533979	NIPA2	Q8N8Q9	360 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	COLGALT1	Q8NBJ5	622 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	RNF149	Q8NC42	400 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	BBOF1	Q8ND07	529 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	OR13A1	Q8NGR1	328 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	OR52J3	Q8NH60	311 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	MIPOL1	Q8TD10	442 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	TMEM45B	Q96B21	275 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	RASD2	Q96D21	266 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	OXNAD1	Q96HP4	312 aa	Predicted RBP	4.16	□□□□□ -1.74
ATM-223	ENST00000533979	DUX3	Q96PT4	197 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	VPS35	Q96QK1	796 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	CCDC3	Q9BQI4	270 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	PANK2	Q9BZ23	570 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	MIS12	Q9H081	205 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	FANCE	Q9HB96	536 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	APMAP	Q9HDC9	416 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	RPRD1B	Q9NQG5	326 aa	Known RBP	4.16	□□□□□ -1.74
ATM-223	ENST00000533979	ETNK2	Q9NVF9	386 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	BCAP29	Q9UHQ4	241 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	PLCL2	Q9UPR0	1127 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	AMDHD2	Q9Y303	409 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	N6AMT1	Q9Y5N5	214 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	MROH5	Q6ZUA9	1318 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	CUL9	Q8IWT3	2517 aa		4.16	□□□□□ -1.74
ATM-223	ENST00000533979	FMN2	Q9NZ56	1722 aa		4.15	□□□□□ -1.74
ATM-223	ENST00000533979		A0A0C4DFX4	3053 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979		A0A1W2PRB8	838 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	RNF222	A6NCQ9	220 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	HELT	A6NFD8	242 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	C5orf60	A6NFR6	353 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979		M0QX08	132 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	SDHD	O14521	159 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	ZNF264	O43296	627 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	ZNF208	O43345	1280 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	EXTL3	O43909	919 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	CAPN1	P07384	714 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	APRT	P07741	180 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	KRT19	P08727	400 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	CDH1	P12830	882 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	POLR2C	P19387	275 aa	Predicted RBP	4.15	□□□□□ -1.75
ATM-223	ENST00000533979	NCF2	P19878	526 aa	Predicted RBP	4.15	□□□□□ -1.75
ATM-223	ENST00000533979	TRIM23	P36406	574 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	CAPG	P40121	348 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	CLDN17	P56750	224 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	GABPA	Q06546	454 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	TRAP1	Q12931	704 aa	Known RBP	4.15	□□□□□ -1.75
ATM-223	ENST00000533979	NME3	Q13232	169 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	SRSF5	Q13243	272 aa	Known RBP	4.15	□□□□□ -1.75
ATM-223	ENST00000533979	TMEM132D	Q14C87	1099 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	DPYSL2	Q16555	572 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	HADH	Q16836	314 aa	Known RBP	4.15	□□□□□ -1.75
ATM-223	ENST00000533979	ITPRIPL2	Q3MIP1	535 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	ZNF311	Q5JNZ3	666 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	IRAK1BP1	Q5VVH5	260 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	TTC23	Q5W5X9	447 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	CLEC2A	Q6UVW9	174 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	GFRAL	Q6UXV0	394 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	RAD9B	Q6WBX8	426 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	FAM228A	Q86W67	206 aa		4.15	□□□□□ -1.75
ATM-223	ENST00000533979	CCDC60	Q8IWA6	550 aa	Predicted RBP	4.15	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms