RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 EIF3LQ9Y262 564 aaKnown RBP9.41□□□□□ -0.9
VPS28-204ENST00000526054 FBN2P35556 2912 aa9.41□□□□□ -0.9
VPS28-204ENST00000526054 TRBV11-1A0A0K0K1C0 115 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 ASPDHA6ND91 283 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 NPIPA5E9PKD4 350 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 MAN1A2O60476 641 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 KITP10721 976 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 PRPS2P11908 318 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 BCKDHAP12694 445 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 PORP16435 677 aaPredicted RBP9.4□□□□□ -0.9
VPS28-204ENST00000526054 ZNF24P17028 368 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 SDC1P18827 310 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 NT5EP21589 574 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 HPCAL1P37235 193 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 RPL3P39023 403 aaKnown RBP9.4□□□□□ -0.9
VPS28-204ENST00000526054 ADORA2A-AS1P86434 159 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 SPRED3Q2MJR0 410 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 KRTCAP3Q53RY4 240 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 FAM71E1Q6IPT2 247 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 GALNTL5Q7Z4T8 443 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 R3HCC1LQ7Z5L2 792 aaKnown RBP9.4□□□□□ -0.9
VPS28-204ENST00000526054 WDR75Q8IWA0 830 aaKnown RBP9.4□□□□□ -0.9
VPS28-204ENST00000526054 GALNT12Q8IXK2 581 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 MMP21Q8N119 569 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 LRRC25Q8N386 305 aaPredicted RBP9.4□□□□□ -0.9
VPS28-204ENST00000526054 LIX1Q8N485 282 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 SLC2A12Q8TD20 617 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 ELP5Q8TE02 316 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 PTPMT1Q8WUK0 201 aaPredicted RBP9.4□□□□□ -0.9
VPS28-204ENST00000526054 RIT1Q92963 219 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 UCN3Q969E3 161 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 NCLNQ969V3 563 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 EXOSC8Q96B26 276 aaKnown RBP9.4□□□□□ -0.9
VPS28-204ENST00000526054 TSSK3Q96PN8 268 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 CNPPD1Q9BV87 410 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 DEFB126Q9BYW3 111 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 OR8D2Q9GZM6 311 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 MEAF6Q9HAF1 191 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 NOP53Q9NZM5 478 aaKnown RBP9.4□□□□□ -0.9
VPS28-204ENST00000526054 LRFN1Q9P244 771 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 NPIPA1Q9UND3 350 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 POLQO75417 2590 aa9.4□□□□□ -0.9
VPS28-204ENST00000526054 CACNA1CQ13936 2221 aa9.4□□□□□ -0.91
VPS28-204ENST00000526054 PKDREJQ9NTG1 2253 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 WASHC1A8K0Z3 465 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 SDHDO14521 159 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 SLC25A12O75746 678 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 NEURL1O76050 574 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 WISP2O76076 250 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 ATP1B1P05026 303 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 SP1P08047 785 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 ABOP16442 354 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 LBPP18428 481 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 AGAP20933 346 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 TACR1P25103 407 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 NTSP30990 170 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 FEN1P39748 380 aaKnown RBP9.39□□□□□ -0.91
VPS28-204ENST00000526054 ERVK-8P63133 956 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 EMX2Q04743 252 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 ZNF267Q14586 743 aaPredicted RBP9.39□□□□□ -0.91
VPS28-204ENST00000526054 IL23RQ5VWK5 629 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 HSDL2Q6YN16 418 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 Q6ZPB1 254 aaPredicted RBP9.39□□□□□ -0.91
VPS28-204ENST00000526054 RGS9BPQ6ZS82 235 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.39□□□□□ -0.91
VPS28-204ENST00000526054 SPPL2CQ8IUH8 684 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 FAM9CQ8IZT9 166 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 GHDCQ8N2G8 530 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 KIF2BQ8N4N8 673 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 APCDD1LQ8NCL9 501 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.39□□□□□ -0.91
VPS28-204ENST00000526054 PPWD1Q96BP3 646 aaKnown RBP9.39□□□□□ -0.91
VPS28-204ENST00000526054 PPCDCQ96CD2 204 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 CNRIP1Q96F85 164 aaPredicted RBP9.39□□□□□ -0.91
VPS28-204ENST00000526054 ZNF764Q96H86 408 aaPredicted RBP9.39□□□□□ -0.91
VPS28-204ENST00000526054 FBXL20Q96IG2 436 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 LURAP1Q96LR2 239 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 BBS4Q96RK4 519 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 TRIM8Q9BZR9 551 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 CDCP1Q9H5V8 836 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 REEP4Q9H6H4 257 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 AKTIPQ9H8T0 292 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 CXorf21Q9HAI6 301 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 SLCO1B3Q9NPD5 702 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 SLC35C2Q9NQQ7 365 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 ASIC5Q9NY37 505 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 MAPRE3Q9UPY8 281 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 ERVK-19Q9WJR5 959 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 ZNF835Q9Y2P0 537 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 MEMO1Q9Y316 297 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 OTOGQ6ZRI0 2925 aa9.39□□□□□ -0.91
VPS28-204ENST00000526054 CELSR1Q9NYQ6 3014 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 DCHS2Q6V1P9 2916 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 A0A1W2PS29 197 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 FCHO1O14526 889 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 AKAP10O43572 662 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 NME2P1O60361 137 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 TBX19O60806 448 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 ZFAND5O76080 213 aa9.38□□□□□ -0.91
VPS28-204ENST00000526054 LRATO95237 230 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms