RNA–Protein interactions for RNA: ENST00000497488.1

BRCA1-224, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-224ENST00000497488 F7P08709 466 aaPredicted RBP5.5□□□□□ -1.53
BRCA1-224ENST00000497488 FGF2P09038 288 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 SRMP19623 302 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 LAP3P28838 519 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 PTGS2P35354 604 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 RPS5P46782 204 aaKnown RBP5.5□□□□□ -1.53
BRCA1-224ENST00000497488 CSNK1EP49674 416 aaKnown RBP5.5□□□□□ -1.53
BRCA1-224ENST00000497488 MERTKQ12866 999 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 ICAM4Q14773 271 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 MEF2DQ14814 521 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 ZNF169Q14929 603 aaPredicted RBP5.5□□□□□ -1.53
BRCA1-224ENST00000497488 OPCMLQ14982 345 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 OR1C1Q15619 314 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 ALKBH6Q3KRA9 238 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 ACSF3Q4G176 576 aaPredicted RBP5.5□□□□□ -1.53
BRCA1-224ENST00000497488 LY6G5CQ5SRR4 150 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 WLSQ5T9L3 541 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 PRAMEF17Q5VTA0 474 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 LYPLAL1Q5VWZ2 237 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 PDPK2PQ6A1A2 396 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 SLC27A4Q6P1M0 643 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 CWC27Q6UX04 472 aaKnown RBP5.5□□□□□ -1.53
BRCA1-224ENST00000497488 C17orf107Q6ZR85 190 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 TTLL10Q6ZVT0 673 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 NLRP9Q7RTR0 991 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 C5orf24Q7Z6I8 188 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 ZC3H3Q8IXZ2 948 aaKnown RBP5.5□□□□□ -1.53
BRCA1-224ENST00000497488 CDK20Q8IZL9 346 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 ADAD2Q8NCV1 583 aaKnown RBP5.5□□□□□ -1.53
BRCA1-224ENST00000497488 M1APQ8TC57 530 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 GRHL3Q8TE85 626 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 TMEM174Q8WUU8 243 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 MITD1Q8WV92 249 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 BPIFA2Q96DR5 249 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 NAF1Q96HR8 494 aaKnown RBP5.5□□□□□ -1.53
BRCA1-224ENST00000497488 PRRC1Q96M27 445 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 RPRD1AQ96P16 312 aaPredicted RBP5.5□□□□□ -1.53
BRCA1-224ENST00000497488 TGM7Q96PF1 710 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 PANX2Q96RD6 677 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 NLNQ9BYT8 704 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 RGCCQ9H4X1 137 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 MCCC2Q9HCC0 563 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 SLC38A7Q9NVC3 462 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 SMPD4Q9NXE4 827 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 UBAP1Q9NZ09 502 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 ADAM28Q9UKQ2 775 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 STUB1Q9UNE7 303 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 GSTK1Q9Y2Q3 226 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 WDR45Q9Y484 360 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 RNF114Q9Y508 228 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 COLEC10Q9Y6Z7 277 aa5.5□□□□□ -1.53
BRCA1-224ENST00000497488 TRPM3Q9HCF6 1732 aaPredicted RBP5.5□□□□□ -1.53
BRCA1-224ENST00000497488 TNS3Q68CZ2 1445 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 TTC26A0AVF1 554 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 MANSC4A6NHS7 340 aaPredicted RBP5.49□□□□□ -1.53
BRCA1-224ENST00000497488 SRRM4A7MD48 611 aaKnown RBP5.49□□□□□ -1.53
BRCA1-224ENST00000497488 PRR23D1E9PI22 279 aaPredicted RBP5.49□□□□□ -1.53
BRCA1-224ENST00000497488 H3BTX0 84 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 ZNF701M0R085 212 aaPredicted RBP5.49□□□□□ -1.53
BRCA1-224ENST00000497488 BTN3A3O00478 584 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 TLX3O43711 291 aaPredicted RBP5.49□□□□□ -1.53
BRCA1-224ENST00000497488 SOX30O94993 753 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 PRR23D2P0DMB1 279 aaPredicted RBP5.49□□□□□ -1.53
BRCA1-224ENST00000497488 MSH3P20585 1137 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 KCNJ4P48050 445 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 TPMTP51580 245 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 C21orf59P57076 290 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 RPS18P62269 152 aaKnown RBP5.49□□□□□ -1.53
BRCA1-224ENST00000497488 HERVK_113P63132 956 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 ERVK-8P63133 956 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 GHRHRQ02643 423 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 CDKN3Q16667 212 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 FAM76BQ5HYJ3 339 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 FAM122CQ6P4D5 195 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 RAD9BQ6WBX8 426 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 TMEM64Q6YI46 380 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 Q6ZSV7 163 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 AMIGO2Q86SJ2 522 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 GPALPP1Q8IXQ4 340 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 RCOR2Q8IZ40 523 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 NFAM1Q8NET5 270 aaPredicted RBP5.49□□□□□ -1.53
BRCA1-224ENST00000497488 OR4C5Q8NGB2 326 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 GLYATL2Q8WU03 294 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 TMEM255BQ8WV15 326 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 ASB5Q8WWX0 329 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 OR1E3Q8WZA6 343 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 FAM3CQ92520 227 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 SH3YL1Q96HL8 342 aaPredicted RBP5.49□□□□□ -1.53
BRCA1-224ENST00000497488 AKR1E2Q96JD6 320 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 KRTAP4-12Q9BQ66 201 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 TRAF4Q9BUZ4 470 aaPredicted RBP5.49□□□□□ -1.53
BRCA1-224ENST00000497488 ERVK-6Q9BXR3 956 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 POLR3FQ9H1D9 316 aaPredicted RBP5.49□□□□□ -1.53
BRCA1-224ENST00000497488 ANKRA2Q9H9E1 313 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 CHRAC1Q9NRG0 131 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 SEMA4GQ9NTN9 838 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 STAU2Q9NUL3 570 aaKnown RBP eCLIP5.49□□□□□ -1.53
BRCA1-224ENST00000497488 RNF186Q9NXI6 227 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 NLGN3Q9NZ94 848 aa5.49□□□□□ -1.53
BRCA1-224ENST00000497488 MSRB1Q9NZV6 116 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms