RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 PCBP1Q15365 356 aaKnown RBP eCLIP4.73□□□□□ -1.65
CCDC39-204ENST00000476379 GPR19Q15760 415 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 FAM26DQ5JW98 314 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 PLBD1Q6P4A8 553 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 SHISA6Q6ZSJ9 500 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 LINGO2Q7L985 606 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 UBE2Q1Q7Z7E8 422 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 AMZ2Q86W34 360 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 AMIGO1Q86WK6 493 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 C12orf40Q86WS4 652 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 VRK2Q86Y07 508 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 PHC2Q8IXK0 858 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 HDDC3Q8N4P3 179 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 AMER3Q8N944 861 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 DCAF4L2Q8NA75 395 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 OR4K5Q8NGD3 323 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 WDR20Q8TBZ3 569 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 TSACCQ96A04 125 aaPredicted RBP4.73□□□□□ -1.65
CCDC39-204ENST00000476379 TSPAN18Q96SJ8 248 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 SLC25A18Q9H1K4 315 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 MRM3Q9HC36 420 aaKnown RBP4.73□□□□□ -1.65
CCDC39-204ENST00000476379 PCDHB11Q9Y5F2 797 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 BLOC1S5-TXNDC5H3BN57 136 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 ZZEF1O43149 2961 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 AKR7A2O43488 359 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 PLGP00747 810 aaPredicted RBP4.73□□□□□ -1.65
CCDC39-204ENST00000476379 HRGP04196 525 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 C1SP09871 688 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 CTSAP10619 480 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 POLR2CP19387 275 aaPredicted RBP4.73□□□□□ -1.65
CCDC39-204ENST00000476379 CHMP24386 653 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 CERS1P27544 350 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 UQCRC1P31930 480 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 SCN1BQ07699 218 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 ESPL1Q14674 2120 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 TOMM20Q15388 145 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 FAAP20Q6NZ36 180 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 FRRS1Q6ZNA5 592 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 Q6ZS52 159 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 NRMQ8IXM6 262 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 KRT78Q8N1N4 520 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 Q8N402 240 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 TP53I13Q8NBR0 393 aaPredicted RBP4.73□□□□□ -1.65
CCDC39-204ENST00000476379 SLC37A3Q8NCC5 494 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 SLC5A11Q8WWX8 675 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 ISL2Q96A47 359 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 CREB3L1Q96BA8 519 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 SLC25A36Q96CQ1 311 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 DOCK7Q96N67 2140 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 HHIPQ96QV1 700 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 BCL7BQ9BQE9 202 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 GINS4Q9BRT9 223 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 ZCCHC2Q9C0B9 1178 aaKnown RBP4.73□□□□□ -1.65
CCDC39-204ENST00000476379 CLMPQ9H6B4 373 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 ARNT2Q9HBZ2 717 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 SMURF1Q9HCE7 757 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 ING3Q9NXR8 418 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 AHSPQ9NZD4 102 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 ABCD2Q9UBJ2 740 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 GULP1Q9UBP9 304 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 PTBP2Q9UKA9 531 aaKnown RBP4.73□□□□□ -1.65
CCDC39-204ENST00000476379 GRIP1Q9Y3R0 1128 aa4.73□□□□□ -1.65
CCDC39-204ENST00000476379 MED13LQ71F56 2210 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 CDC14CA4D256 554 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 LRRN3E7EW58 273 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 EIF1AYO14602 144 aaKnown RBP4.72□□□□□ -1.65
CCDC39-204ENST00000476379 SLC30A4O14863 429 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 PRAMEF4O60810 478 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 UCHL1P09936 223 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 HMGA1P17096 107 aaKnown RBP4.72□□□□□ -1.65
CCDC39-204ENST00000476379 CD22P20273 847 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 MYL9P24844 172 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 TIA1P31483 386 aaKnown RBP eCLIP4.72□□□□□ -1.65
CCDC39-204ENST00000476379 MC3RP41968 323 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 RGS6P49758 472 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 FCHO2Q0JRZ9 810 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 SNTA1Q13424 505 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 TYSND1Q2T9J0 566 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 ANXA8L1Q5VT79 327 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 PRAMEF9Q5VWM5 478 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 ENPP7Q6UWV6 458 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 TMEM64Q6YI46 380 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 GALNTL5Q7Z4T8 443 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 LUZP2Q86TE4 346 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 PLA2G15Q8NCC3 412 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 FBXO15Q8NCQ5 510 aaPredicted RBP4.72□□□□□ -1.65
CCDC39-204ENST00000476379 OR13C5Q8NGS8 318 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 OR9A2Q8NGT5 310 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 ZNF420Q8TAQ5 688 aaPredicted RBP4.72□□□□□ -1.65
CCDC39-204ENST00000476379 NEIL3Q8TAT5 605 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 GLYATL1Q969I3 302 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 ZG16BQ96DA0 208 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 CXorf40BQ96DE9 158 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 NUS1Q96E22 293 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 CMTM7Q96FZ5 175 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 MSANTD3Q96H12 275 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 FAM210AQ96ND0 272 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 CPPED1Q9BRF8 314 aaPredicted RBP4.72□□□□□ -1.65
CCDC39-204ENST00000476379 DPH1Q9BZG8 443 aa4.72□□□□□ -1.65
CCDC39-204ENST00000476379 UCK2Q9BZX2 261 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms