RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 LETMD1Q6P1Q0 360 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 SIMC1Q8NDZ2 872 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 OR4F6Q8NGB9 312 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ZNF483Q8TF39 744 aaPredicted RBP11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 NINJ1Q92982 152 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 HGDQ93099 445 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 WDYHV1Q96HA8 205 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 TMEM41AQ96HV5 264 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ZNF597Q96LX8 424 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 C16orf45Q96MC5 204 aaPredicted RBP11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ZNF681Q96N22 645 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 NXF5Q9H1B4 397 aaKnown RBP11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 VPS11Q9H270 941 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CDC42EP4Q9H3Q1 356 aaKnown RBP11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 EXO5Q9H790 373 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 BRF2Q9HAW0 419 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 FARSBQ9NSD9 589 aaKnown RBP11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 AHSPQ9NZD4 102 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 MAT2BQ9NZL9 334 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 JKAMPQ9P055 326 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 XPR1Q9UBH6 696 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ZNF180Q9UJW8 692 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 C15orf41Q9Y2V0 281 aa11.2□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 C1orf226A1L170 272 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 PPM1BO75688 479 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CBX7O95931 251 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 PDYNP01213 254 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 BMP7P18075 431 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 GDF1P27539 372 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 PTPN6P29350 595 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 PEX19P40855 299 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 TMED10P49755 219 aaKnown RBP11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 SERPINB9P50453 376 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ZNF136P52737 540 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 DUSP2Q05923 314 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 DAZAP2Q15038 168 aaPredicted RBP11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 UAP1Q16222 522 aaPredicted RBP11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 TSNAXIP1Q2TAA8 658 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CCNYL2Q5T2Q4 361 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 DESI1Q6ICB0 168 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 C8orf74Q6P047 294 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 FAM111BQ6SJ93 734 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 RPS27LQ71UM5 84 aaKnown RBP11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 PAGE2Q7Z2X7 111 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 COMMD6Q7Z4G1 85 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 MILR1Q7Z6M3 343 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ADGRE4PQ86SQ3 457 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 PACS2Q86VP3 889 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 LACC1Q8IV20 430 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 MMP21Q8N119 569 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 MMGT1Q8N4V1 131 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 DCAKDQ8WVC6 231 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ATP6V1E2Q96A05 226 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 HSPBAP1Q96EW2 488 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 C11orf24Q96F05 449 aaPredicted RBP11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 JSRP1Q96MG2 331 aaPredicted RBP11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 PAFAH2Q99487 392 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 FOXC2Q99958 501 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 MRPL57Q9BQC6 102 aaKnown RBP11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 TMUB1Q9BVT8 246 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 UGT2B28Q9BY64 529 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 RASSF1Q9NS23 344 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CRIM1Q9NZV1 1036 aa11.19□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 MBD3L4A6NDZ8 208 aaPredicted RBP11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 MBD3L3A6NE82 208 aaPredicted RBP11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 MBD3L5A6NJ08 208 aaPredicted RBP11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 TO15178 435 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CDH16O75309 829 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ZWINTO95229 277 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 HSD17B3P37058 310 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 KIR2DL3P43628 341 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 EMDP50402 254 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ASCL1P50553 236 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ART1P52961 327 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 MAPK12P53778 367 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 NAGLUP54802 743 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 WNT3P56703 355 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 NRG3P56975 720 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 TRA2BP62995 288 aaKnown RBP11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 IFT88Q13099 833 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 MYBPHQ13203 477 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 SNTA1Q13424 505 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 SNTB1Q13884 538 aaKnown RBP11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 EIPR1Q53HC9 387 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 DCST1Q5T197 706 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 FAM219BQ5XKK7 198 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 HLA-DQA1Q5Y7H0 255 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 NUP54Q7Z3B4 507 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 WDR53Q7Z5U6 358 aaPredicted RBP11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 TMEM200AQ86VY9 491 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ZZZ3Q8IYH5 903 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 PM20D2Q8IYS1 436 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 VWA5B2Q8N398 1253 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 LIX1Q8N485 282 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 WDSUB1Q8N9V3 476 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 MBD3L2Q8NHZ7 208 aaPredicted RBP11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 RNF138Q8WVD3 245 aa11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 RNASE6Q93091 150 aaKnown RBP11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CNRIP1Q96F85 164 aaPredicted RBP11.18□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 LCORQ96JN0 433 aaPredicted RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms