RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 SDC3O75056 442 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 PDE9AO76083 593 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 GADD45GO95257 159 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 CCDC159P0C7I6 412 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 NR2F1P10589 423 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 RHCEP18577 417 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 TTKP33981 857 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 CXCL12P48061 93 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 XKP51811 444 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 PRR5P85299 388 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 KCNC4Q03721 635 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 DMWDQ09019 674 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 FUT5Q11128 374 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 DEFB133Q30KQ1 61 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 LAIR1Q6GTX8 287 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 Q6ZPB1 254 aaPredicted RBP17.16■□□□□ 0.34
COL9A3-205ENST00000466192 DEFB123Q8N688 67 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 C19orf47Q8N9M1 422 aaKnown RBP17.16■□□□□ 0.34
COL9A3-205ENST00000466192 OR5T3Q8NGG3 340 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 NIPSNAP1Q9BPW8 284 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 CCDC90BQ9GZT6 254 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 RASSF1Q9NS23 344 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 MS4A12Q9NXJ0 267 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 SEC14L3Q9UDX4 400 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 NAALAD2Q9Y3Q0 740 aa17.16■□□□□ 0.34
COL9A3-205ENST00000466192 SLC9B1P1A6NJY1 282 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 AQP9O43315 295 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 ZNF605Q86T29 641 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 ALDH16A1Q8IZ83 802 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 LRRC25Q8N386 305 aaPredicted RBP17.15■□□□□ 0.34
COL9A3-205ENST00000466192 AVL9Q8NBF6 648 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 NUP43Q8NFH3 380 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 OR4K14Q8NGD5 310 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 MIPOL1Q8TD10 442 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 PHF10Q8WUB8 498 aaKnown RBP17.15■□□□□ 0.34
COL9A3-205ENST00000466192 PROX1Q92786 737 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 C12orf43Q96C57 262 aaKnown RBP17.15■□□□□ 0.34
COL9A3-205ENST00000466192 ZNF607Q96SK3 696 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 CCDC3Q9BQI4 270 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 GABARAPL3Q9BY60 117 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 LYRM4Q9HD34 91 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 KCNE3Q9Y6H6 103 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 HSPE1-MOB4S4R3N1 261 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 GALR3O60755 368 aaPredicted RBP17.15■□□□□ 0.34
COL9A3-205ENST00000466192 NME6O75414 186 aaPredicted RBP17.15■□□□□ 0.34
COL9A3-205ENST00000466192 POU2F1P14859 743 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 TLX1P31314 330 aaPredicted RBP17.15■□□□□ 0.34
COL9A3-205ENST00000466192 MAGEA8P43361 318 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 CAPZBP47756 277 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 HNRNPKP61978 463 aaKnown RBP eCLIP17.15■□□□□ 0.341e-6■■■■□ 21.6
COL9A3-205ENST00000466192 SMN1Q16637 294 aaKnown RBP17.15■□□□□ 0.34
COL9A3-205ENST00000466192 SLC36A4Q6YBV0 504 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 C17orf82Q86X59 251 aaPredicted RBP17.15■□□□□ 0.34
COL9A3-205ENST00000466192 ERI1Q8IV48 349 aaKnown RBP17.15■□□□□ 0.34
COL9A3-205ENST00000466192 ZNF566Q969W8 418 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 COL26A1Q96A83 441 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 NODALQ96S42 347 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 TUBA1CQ9BQE3 449 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 NAA50Q9GZZ1 169 aaKnown RBP17.15■□□□□ 0.34
COL9A3-205ENST00000466192 UCK1Q9HA47 277 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 C3orf14Q9HBI5 128 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 UCKL1Q9NWZ5 548 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 SIT1Q9Y3P8 196 aa17.15■□□□□ 0.34
COL9A3-205ENST00000466192 GPC6Q9Y625 555 aaPredicted RBP17.15■□□□□ 0.34
COL9A3-205ENST00000466192 GIMAP1-GIMAP5A0A087WTJ2 511 aa17.14■□□□□ 0.33
COL9A3-205ENST00000466192 LMO7DNF2Z398 122 aa17.14■□□□□ 0.33
COL9A3-205ENST00000466192 FFAR1O14842 300 aa17.14■□□□□ 0.33
COL9A3-205ENST00000466192 PROS1P07225 676 aa17.14■□□□□ 0.33
COL9A3-205ENST00000466192 ANXA8P13928 327 aa17.14■□□□□ 0.33
COL9A3-205ENST00000466192 JUNBP17275 347 aaPredicted RBP17.14■□□□□ 0.33
COL9A3-205ENST00000466192 LIMS1P48059 325 aa17.14■□□□□ 0.33
COL9A3-205ENST00000466192 MAD2L1BPQ15013 274 aaPredicted RBP17.14■□□□□ 0.33
COL9A3-205ENST00000466192 KLHL35Q6PF15 583 aa17.14■□□□□ 0.33
COL9A3-205ENST00000466192 TMEM52Q8NDY8 209 aa17.14■□□□□ 0.33
COL9A3-205ENST00000466192 OR7G2Q8NG99 324 aa17.14■□□□□ 0.33
COL9A3-205ENST00000466192 OR13F1Q8NGS4 319 aa17.14■□□□□ 0.33
COL9A3-205ENST00000466192 VANGL1Q8TAA9 524 aaPredicted RBP17.14■□□□□ 0.33
COL9A3-205ENST00000466192 GIMAP5Q96F15 307 aa17.14■□□□□ 0.33
COL9A3-205ENST00000466192 HRASLS5Q96KN8 279 aa17.14■□□□□ 0.33
COL9A3-205ENST00000466192 SLC38A3Q99624 504 aa17.14■□□□□ 0.33
COL9A3-205ENST00000466192 PITX2Q99697 317 aa17.14■□□□□ 0.33
COL9A3-205ENST00000466192 MAP3K3Q99759 626 aa17.14■□□□□ 0.33
COL9A3-205ENST00000466192 LHPPQ9H008 270 aa17.14■□□□□ 0.33
COL9A3-205ENST00000466192 EQTNQ9NQ60 294 aa17.14■□□□□ 0.33
COL9A3-205ENST00000466192 PCDHGA6Q9Y5G7 932 aa17.14■□□□□ 0.33
COL9A3-205ENST00000466192 SNX5Q9Y5X3 404 aa17.14■□□□□ 0.33
COL9A3-205ENST00000466192 CABIN1Q9Y6J0 2220 aa17.14■□□□□ 0.33
COL9A3-205ENST00000466192 LILRA5A6NI73 299 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 PCDHGA12O60330 932 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 SERPINB7O75635 380 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 CHRM4P08173 479 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 DCKP27707 260 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 PPP2R1BP30154 601 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 KCNJ5P48544 419 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 MAN2A2P49641 1150 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 HMGA2P52926 109 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 ID2Q02363 134 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 FAM111BQ6SJ93 734 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 USP53Q70EK8 1073 aa17.13■□□□□ 0.33
COL9A3-205ENST00000466192 HMGN2P46Q86SG4 172 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms