RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 PPP6CO00743 305 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 LRATO95237 230 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 HPNP05981 417 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 HSD3B1P14060 373 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 TAC1P20366 129 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 HSD3B2P26439 372 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 ABCD3P28288 659 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 HSD17B3P37058 310 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 CASP3P42574 277 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 CDK9P50750 372 aaKnown RBP13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 CDH13P55290 713 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 CLCQ05315 142 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 DUSP8Q13202 625 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 SF3B4Q15427 424 aaKnown RBP eCLIP13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 HSPB2Q16082 182 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 PRICKLE4Q2TBC4 344 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 FNDC7Q5VTL7 733 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 CES4AQ5XG92 561 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 RPS27LQ71UM5 84 aaKnown RBP13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 LIX1LQ8IVB5 337 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 TM4SF18Q96CE8 201 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 TMEM41AQ96HV5 264 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 FAIM2Q9BWQ8 316 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 VPS29Q9UBQ0 182 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 ZNF225Q9UK10 706 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 C15orf41Q9Y2V0 281 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 C2CD3Q4AC94 2353 aa13.16□□□□□ -0.3
SNRNP40-203ENST00000463988 NCKAP5O14513 1909 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 FREM3P0C091 2139 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 ACOX3O15254 700 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 PPM1BO75688 479 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 EPPINO95925 133 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 KRT6AP02538 564 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 KRT6BP04259 564 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 ABCB1P08183 1280 aaPredicted RBP13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 KRT15P19012 456 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 PEX19P40855 299 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 KRT6CP48668 564 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 MASP1P48740 699 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 TRPC1P48995 793 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 DCAF7P61962 342 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 CRYZQ08257 329 aaKnown RBP13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 RASA2Q15283 850 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 NHSL2Q5HYW2 709 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 BICRALQ6AI39 1079 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 TIGD3Q6B0B8 471 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 VASNQ6EMK4 673 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 SPNS3Q6ZMD2 512 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 TRMT10CQ7L0Y3 403 aaKnown RBP13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 NUP54Q7Z3B4 507 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 PM20D2Q8IYS1 436 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 UHMK1Q8TAS1 419 aaKnown RBP13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 ZNF592Q92610 1267 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 CTHRC1Q96CG8 243 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 KLHL29Q96CT2 875 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 HSPBAP1Q96EW2 488 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 ZNF382Q96SR6 550 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 TIMP4Q99727 224 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 PRDM14Q9GZV8 571 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 NXF5Q9H1B4 397 aaKnown RBP13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 MAT2BQ9NZL9 334 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 FETUBQ9UGM5 382 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 ITGB1BP2Q9UKP3 347 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 STK38LQ9Y2H1 464 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 AKAP9Q99996 3911 aa13.15□□□□□ -0.3
SNRNP40-203ENST00000463988 C15orf38-AP3S2A0A0A6YYH1 394 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 MANBAO00462 879 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 ERAL1O75616 437 aaKnown RBP13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 TRAPPC6AO75865 159 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 OR4F21O95013 312 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 DRD2P14416 443 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 TSPAN8P19075 237 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 IMPDH1P20839 514 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 GCAP28676 217 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 CEACAM8P31997 349 aaPredicted RBP13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 TIMP3P35625 211 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 FEN1P39748 380 aaKnown RBP13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 PPICP45877 212 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 DLX5P56178 289 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 CSTF3Q12996 717 aaKnown RBP13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 MYBPHQ13203 477 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 SNTA1Q13424 505 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 ACSF3Q4G176 576 aaPredicted RBP13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 UNC50Q53HI1 259 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 ZNF678Q5SXM1 525 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 FAM111BQ6SJ93 734 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 SEM1Q6ZVN7 128 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 LACC1Q8IV20 430 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 SAMD14Q8IZD0 417 aaPredicted RBP13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 C1orf52Q8N6N3 182 aaKnown RBP13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 GBP7Q8N8V2 638 aaPredicted RBP13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 ERP27Q96DN0 273 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 CNRIP1Q96F85 164 aaPredicted RBP13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 LCORQ96JN0 433 aaPredicted RBP13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 ZNF681Q96N22 645 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 GNRHR2Q96P88 292 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 BRINP2Q9C0B6 783 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 PRODH2Q9UF12 536 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 MCM8Q9UJA3 840 aa13.14□□□□□ -0.31
SNRNP40-203ENST00000463988 DTX4Q9Y2E6 619 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms