RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 GANQ9H2C0 597 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 FSCN3Q9NQT6 498 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 BIN3Q9NQY0 253 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 BABAM2Q9NXR7 383 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 MGAT4BQ9UQ53 548 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 EXOGQ9Y2C4 368 aaKnown RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 TCAF1Q9Y4C2 921 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 ADGRA2Q96PE1 1338 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 TCF20Q9UGU0 1960 aaKnown RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 DOCK1Q14185 1865 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 FABP12A6NFH5 140 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 CD8B2A6NJW9 211 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 PDZK1P1A8MUH7 402 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 KDM4EB2RXH2 506 aaPredicted RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 KLRC4-KLRK1H3BQV0 150 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 TEX46H3BTG2 121 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 SMIM22K7EJ46 135 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 MID1O15344 667 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 OR10H3O60404 316 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 ADAP1O75689 374 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 TOP3BO95985 862 aaKnown RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 MPOP05164 745 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 TFAP2AP05549 437 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 HLA-DOAP06340 250 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 MELTFP08582 738 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 INHBBP09529 407 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 TRIM49P0CI25 452 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 TRIM49CP0CI26 452 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 CYP2D6P10635 497 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 CYP4B1P13584 511 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 FOSL2P15408 326 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 JUNBP17275 347 aaPredicted RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 PSMC3P17980 439 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 UGT1A1P22309 533 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 ME2P23368 584 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 GTF2E2P29084 291 aaKnown RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 UQCRC1P31930 480 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 HNRNPH3P31942 346 aaKnown RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 THBS4P35443 961 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 CHRNA4P43681 627 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 ERVS71-1P61550 626 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 ARF6P62330 175 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 MYL7Q01449 175 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 IL18R1Q13478 541 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 ENPP2Q13822 863 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 C5orf64Q2M2E5 130 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 HYAL4Q2M3T9 481 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 ALKBH6Q3KRA9 238 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 GALNTL6Q49A17 601 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 KIAA1755Q5JYT7 1200 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 PLAG1Q6DJT9 500 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 C17orf99Q6UX52 265 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 TFAP2EQ6VUC0 442 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 MED25Q71SY5 747 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 SLC35D2Q76EJ3 337 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 ABHD12BQ7Z5M8 362 aaPredicted RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 MYPOPQ86VE0 399 aaPredicted RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 YAF2Q8IY57 180 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 RNF113BQ8IZP6 322 aaKnown RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 CCDC197Q8NCU1 140 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 TRUB1Q8WWH5 349 aaKnown RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 MYLIPQ8WY64 445 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 BCL2L2Q92843 193 aaPredicted RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 MCUR1Q96AQ8 359 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 SH3YL1Q96HL8 342 aaPredicted RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 PBKQ96KB5 322 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 NPAS1Q99742 590 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 RTN4RQ9BZR6 473 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 PCBD2Q9H0N5 130 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 CDT1Q9H211 546 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 HIPK2Q9H2X6 1198 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 KLHL31Q9H511 634 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 POLR1BQ9H9Y6 1135 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 VAT1LQ9HCJ6 419 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 TNFRSF12AQ9NP84 129 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 IMP3Q9NV31 184 aaKnown RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 PLEK2Q9NYT0 353 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 PPP4R1LQ9P1A2 415 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 PTGFRNQ9P2B2 879 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 SAE1Q9UBE0 346 aaPredicted RBP4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 STOML2Q9UJZ1 356 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 ABCG2Q9UNQ0 655 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 SNX11Q9Y5W9 270 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 AUP1Q9Y679 476 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 ZMYM6O95789 1325 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 ROBO3Q96MS0 1386 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 PLXNB2O15031 1838 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 ATAD5Q96QE3 1844 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 NAV1Q8NEY1 1877 aa4.54□□□□□ -1.68
CCDC88A-209ENST00000456975 A0A087WZY1 265 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 PIPSLA2A3N6 862 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 GRID2IPA4D2P6 1211 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 MBD3L4A6NDZ8 208 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 MBD3L3A6NE82 208 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 FBLL1A6NHQ2 334 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 SERPINE3A8MV23 424 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 C1QTNF3-AMACRE9PGA6 284 aa4.53□□□□□ -1.68
CCDC88A-209ENST00000456975 J3KTA2 159 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms