RNA–Protein interactions for RNA: ENST00000438801.1

HMGB1P18-201, Transcript of high mobility group box 1 pseudogene 18, humanhuman

BASIC

Gene HMGB1P18, Length 619 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P18-201ENST00000438801 RHOXF1Q8NHV9 184 aa2.13□□□□□ -2.07
HMGB1P18-201ENST00000438801 MUC7Q8TAX7 377 aa2.13□□□□□ -2.07
HMGB1P18-201ENST00000438801 HDAC2Q92769 488 aaKnown RBP2.13□□□□□ -2.07
HMGB1P18-201ENST00000438801 SMARCD2Q92925 531 aa2.13□□□□□ -2.07
HMGB1P18-201ENST00000438801 THOC1Q96FV9 657 aaKnown RBP2.13□□□□□ -2.07
HMGB1P18-201ENST00000438801 C2orf48Q96LS8 159 aa2.13□□□□□ -2.07
HMGB1P18-201ENST00000438801 TEX13BQ9BXU2 312 aa2.13□□□□□ -2.07
HMGB1P18-201ENST00000438801 TMEM117Q9H0C3 514 aa2.13□□□□□ -2.07
HMGB1P18-201ENST00000438801 MMP27Q9H306 513 aa2.13□□□□□ -2.07
HMGB1P18-201ENST00000438801 EIF2B3Q9NR50 452 aaKnown RBP2.13□□□□□ -2.07
HMGB1P18-201ENST00000438801 DPP3Q9NY33 737 aa2.13□□□□□ -2.07
HMGB1P18-201ENST00000438801 NYAP2Q9P242 653 aa2.13□□□□□ -2.07
HMGB1P18-201ENST00000438801 TMED3Q9Y3Q3 217 aa2.13□□□□□ -2.07
HMGB1P18-201ENST00000438801 MDC1Q14676 2089 aaKnown RBP2.13□□□□□ -2.07
HMGB1P18-201ENST00000438801 GTF3C1Q12789 2109 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 IGHV1OR15-9A0A0B4J2B8 117 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 TCRBV21S2A2A0A5A6 115 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 OR2A25A4D2G3 310 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 TRIM49BA6NDI0 452 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 PTGES3LE9PB15 166 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 TRDMT1O14717 391 aaKnown RBP2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 TCF21O43680 179 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 DUX1O43812 170 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 USO1O60763 962 aaKnown RBP2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 ERAL1O75616 437 aaKnown RBP2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 MBD4O95243 580 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 STSP08842 583 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 BDNFP23560 247 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 OAS2P29728 719 aaKnown RBP2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 DRD3P35462 400 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 LYZP61626 148 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 KLC1Q07866 573 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 IFT88Q13099 833 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 PHKG1Q16816 387 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 C3P1Q6ZMU1 363 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 C4orf50Q6ZRC1 276 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 CHST3Q7LGC8 479 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 OR10G7Q8NGN6 311 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 SHC3Q92529 594 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 SYN2Q92777 582 aaPredicted RBP2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 SKA1Q96BD8 255 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 TIGD1Q96MW7 591 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 SFXN2Q96NB2 322 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 ZIM3Q96PE6 472 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 PAFAH2Q99487 392 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 TREX2Q9BQ50 279 aaPredicted RBP2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 CCDC3Q9BQI4 270 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 OSGEPL1Q9H4B0 414 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 PSD3Q9NYI0 1048 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 MMP17Q9ULZ9 603 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 SELENOKQ9Y6D0 94 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 RPS6KL1Q9Y6S9 549 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 SCN2AQ99250 2005 aa2.12□□□□□ -2.07
HMGB1P18-201ENST00000438801 ANK1P16157 1881 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 TRBV5-5A0A0J9YX44 114 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 PGPEP1LA6NFU8 196 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 CCL21O00585 134 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 CD5LO43866 347 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 DFNA5O60443 496 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 NXPH4O95158 308 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 TGM6O95932 706 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 BCL10O95999 233 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 IGHV2-70P01814 119 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 PSMB10P40306 273 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 TKTL1P51854 596 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 NDPQ00604 133 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 SGCGQ13326 291 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 RFTN1Q14699 578 aaPredicted RBP2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 RAB41Q5JT25 222 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 HYIQ5T013 277 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 TATDN1Q6P1N9 297 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 MAATS1Q7Z4T9 603 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 RNF130Q86XS8 419 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 RPAP2Q8IXW5 612 aaPredicted RBP2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 FAM89BQ8N5H3 189 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 CD177Q8N6Q3 437 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 RTL3Q8N8U3 475 aaKnown RBP2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 CCDC26Q8TAB7 109 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 PTPMT1Q8WUK0 201 aaPredicted RBP2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 NSMAFQ92636 917 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 SLAMF9Q96A28 289 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 EXOC4Q96A65 974 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 SPDL1Q96EA4 605 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 SERAC1Q96JX3 654 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 SPATA13Q96N96 652 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 CASD1Q96PB1 797 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 PNNQ9H307 717 aaKnown RBP2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 OPA3Q9H6K4 179 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 JPT2Q9H910 190 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 EQTNQ9NQ60 294 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 AGPAT4Q9NRZ5 378 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 SUCLA2Q9P2R7 463 aaPredicted RBP2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 KCNN3Q9UGI6 736 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 BTRCQ9Y297 605 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 PADI2Q9Y2J8 665 aa2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 NCOA6Q14686 2063 aaPredicted RBP2.11□□□□□ -2.07
HMGB1P18-201ENST00000438801 DNAH9Q9NYC9 4486 aa2.1□□□□□ -2.07
HMGB1P18-201ENST00000438801 MYCBP2O75592 4640 aa2.1□□□□□ -2.07
HMGB1P18-201ENST00000438801 TRGV8A0A0C4DH27 118 aa2.1□□□□□ -2.07
HMGB1P18-201ENST00000438801 TRBV4-1A0A0J9YWV2 114 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms