RNA–Protein interactions for RNA: ENST00000428962.2

THBS3-202, Transcript of thrombospondin 3, humanhuman

TSL 2

Gene THBS3, Length 1,833 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
THBS3-202ENST00000428962 PROM1O43490 865 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 SULT1C4O75897 302 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 LGI1O95970 557 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 CHRM4P08173 479 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 SLC35G6P0C7Q6 338 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 FUT4P22083 530 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 RANBP1P43487 201 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 RAB8AP61006 207 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 TARDBPQ13148 414 aaKnown RBP eCLIP12.9□□□□□ -0.34
THBS3-202ENST00000428962 ITGADQ13349 1161 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 CEBPEQ15744 281 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 TIMM50Q3ZCQ8 353 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 GPAT3Q53EU6 434 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 ATAD3BQ5T9A4 648 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 MEDAGQ5VYS4 303 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 C12orf73Q69YU5 71 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 PLAG1Q6DJT9 500 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 TMEM107Q6UX40 140 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 CD300LDQ6UXZ3 194 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 ASPGQ86U10 573 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 TRIM69Q86WT6 500 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 CCDC116Q8IYX3 515 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 SAMD14Q8IZD0 417 aaPredicted RBP12.9□□□□□ -0.34
THBS3-202ENST00000428962 CENPSQ8N2Z9 138 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 OR4D11Q8NGI4 311 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 MAFAQ8NHW3 353 aaPredicted RBP12.9□□□□□ -0.34
THBS3-202ENST00000428962 RPL3LQ92901 407 aaKnown RBP12.9□□□□□ -0.34
THBS3-202ENST00000428962 RACGAP1Q9H0H5 632 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 KCNK12Q9HB15 430 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 C11orf16Q9NQ32 467 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 KLF15Q9UIH9 416 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 PHF11Q9UIL8 331 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 SLC13A4Q9UKG4 626 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 LIPT1Q9Y234 373 aa12.9□□□□□ -0.34
THBS3-202ENST00000428962 DOCK9Q9BZ29 2069 aa12.9□□□□□ -0.35
THBS3-202ENST00000428962 POM121BA6NF01 834 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 KPNA4O00629 521 aaPredicted RBP12.89□□□□□ -0.35
THBS3-202ENST00000428962 TOR1BO14657 336 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 TNFRSF10CO14798 259 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 SCAMP1O15126 338 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 MAGEB3O15480 346 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 SEMA7AO75326 666 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 EGFP01133 1207 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 PTHP01270 115 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 GADD45AP24522 165 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 BUD31P41223 144 aaPredicted RBP12.89□□□□□ -0.35
THBS3-202ENST00000428962 BTN3A2P78410 334 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 LEXMQ3ZCV2 418 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 ARMCX4Q5H9R4 360 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 C18orf63Q68DL7 685 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 ZNF554Q86TJ5 538 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 RBM45Q8IUH3 476 aaKnown RBP12.89□□□□□ -0.35
THBS3-202ENST00000428962 LACC1Q8IV20 430 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 AMER2Q8N7J2 671 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 MINDY2Q8NBR6 621 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 OR8J1Q8NGP2 316 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 MCFD2Q8NI22 146 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 SLC7A13Q8TCU3 470 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 SLIRPQ9GZT3 109 aaKnown RBP12.89□□□□□ -0.35
THBS3-202ENST00000428962 S1PR5Q9H228 398 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 RHBDL2Q9NX52 303 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 RPL36Q9Y3U8 105 aaKnown RBP12.89□□□□□ -0.35
THBS3-202ENST00000428962 A3GALT2U3KPV4 340 aa12.89□□□□□ -0.35
THBS3-202ENST00000428962 URADA6NGE7 173 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 AGR2O95994 175 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 GSTM3P21266 225 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 HNRNPA2B1P22626 353 aaKnown RBP12.88□□□□□ -0.35
THBS3-202ENST00000428962 IFNA8P32881 189 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 IFNGR2P38484 337 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 FEN1P39748 380 aaKnown RBP12.88□□□□□ -0.35
THBS3-202ENST00000428962 ACTR1BP42025 376 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 SLC15A1P46059 708 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 RGS6P49758 472 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 CLDN2P57739 230 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 ACTR1AP61163 376 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 FUT5Q11128 374 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 PIN1Q13526 163 aaPredicted RBP12.88□□□□□ -0.35
THBS3-202ENST00000428962 PODNL1Q6PEZ8 512 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 NLGN4XQ8N0W4 816 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 NUP43Q8NFH3 380 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 WDR36Q8NI36 951 aaKnown RBP12.88□□□□□ -0.35
THBS3-202ENST00000428962 JPH3Q8WXH2 748 aaPredicted RBP12.88□□□□□ -0.35
THBS3-202ENST00000428962 TRNT1Q96Q11 434 aaKnown RBP12.88□□□□□ -0.35
THBS3-202ENST00000428962 OR7D2Q96RA2 312 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 YIPF4Q9BSR8 244 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 RSPO3Q9BXY4 272 aaPredicted RBP12.88□□□□□ -0.35
THBS3-202ENST00000428962 MMP27Q9H306 513 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 SLC25A19Q9HC21 320 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 PRDM9Q9NQV7 894 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 CCDC59Q9P031 241 aaKnown RBP12.88□□□□□ -0.35
THBS3-202ENST00000428962 ANKMY1Q9P2S6 941 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 KLK4Q9Y5K2 254 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 WASHC1A8K0Z3 465 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 RFXAPO00287 272 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 BTN3A3O00478 584 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 SOX14O95416 240 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 ALPPP05187 535 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 C8orf89P0DMQ9 161 aa12.88□□□□□ -0.35
THBS3-202ENST00000428962 ZNF10P21506 573 aaPredicted RBP12.88□□□□□ -0.35
THBS3-202ENST00000428962 DRD1P21728 446 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms