RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 SPTSSAQ969W0 71 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 TWNKQ96RR1 684 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 PTPN18Q99952 460 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 ATG5Q9H1Y0 275 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 SEC61A2Q9H9S3 476 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 GOLGA2P5Q9HBQ8 144 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 CACFD1Q9UGQ2 172 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 RNF11Q9Y3C5 154 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 ADAM18Q9Y3Q7 739 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 TRBV2A0A0J9YWF9 115 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 DHRS4L1P0CG22 281 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 HLA-EP13747 358 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 RAC2P15153 192 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 ZNF43P17038 809 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 LMO2P25791 158 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 HMGCLP35914 325 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 RPL6Q02878 288 aaKnown RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 CARTPTQ16568 116 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 EXOC3L2Q2M3D2 409 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 CES4AQ5XG92 561 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 LCTLQ6UWM7 567 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 DPY19L3Q6ZPD9 716 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 TMPPEQ6ZT21 453 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 SGPP2Q8IWX5 399 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 STEAP2Q8NFT2 490 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 GPR148Q8TDV2 347 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 TRIM43Q96BQ3 446 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 PGAM5Q96HS1 289 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 NECTIN4Q96NY8 510 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 CCNL2Q96S94 520 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 MYADMQ96S97 322 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 SERINC2Q96SA4 455 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 TMEM185BQ9H7F4 350 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 DNAJC27Q9NZQ0 273 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 CD84Q9UIB8 345 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 SRPX2O60687 465 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 LILRB3O75022 631 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 TSPAN15O95858 294 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 PRKCAP17252 672 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 SYPL2Q5VXT5 272 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 ZC3H14Q6PJT7 736 aaKnown RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 FAM124AQ86V42 546 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 LRRC28Q86X40 367 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 TREML1Q86YW5 311 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 RNF113BQ8IZP6 322 aaKnown RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 LSM14AQ8ND56 463 aaKnown RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 OR6C4Q8NGE1 309 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 OR51G2Q8NGK0 314 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 ISG20Q96AZ6 181 aaKnown RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 HSPBAP1Q96EW2 488 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 ARL5BQ96KC2 179 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 MS4A4EQ96PG1 132 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 TBX5Q99593 518 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 TMEM181Q9P2C4 612 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 UBE2J1Q9Y385 318 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 INSL5Q9Y5Q6 135 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 RIMS1Q86UR5 1692 aaKnown RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 NPIPA7E9PJI5 369 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 J3KR12 359 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 EEF1E1O43324 174 aaKnown RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 RPP14O95059 124 aaKnown RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 OLFM2O95897 454 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 JUNP05412 331 aaKnown RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 OR4Q2P0C623 313 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 NPIPA8P0DM63 369 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 IGFBP4P22692 258 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 CHATP28329 748 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 RBMS1P29558 406 aaKnown RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 CHRNA4P43681 627 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 TEKQ02763 1124 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 CHAF1BQ13112 559 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 PPA1Q15181 289 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 CNN3Q15417 329 aaKnown RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 KIAA0895LQ68EN5 471 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 TMEM53Q6P2H8 277 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 CYP4V2Q6ZWL3 525 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 OR7G1Q8NGA0 311 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 TBC1D15Q8TC07 691 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 MUL1Q969V5 352 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 MSI2Q96DH6 328 aaKnown RBP5.82□□□□□ -1.48
SCN1A-203ENST00000409050 KLHDC7BQ96G42 594 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 FBXL20Q96IG2 436 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 PSD2Q9BQI7 771 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 CWH43Q9H720 699 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 SACM1LQ9NTJ5 587 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 ICKQ9UPZ9 632 aa5.82□□□□□ -1.48
SCN1A-203ENST00000409050 IFT172Q9UG01 1749 aa5.81□□□□□ -1.48
SCN1A-203ENST00000409050 TRIM64BA6NI03 449 aa5.81□□□□□ -1.48
SCN1A-203ENST00000409050 HEXBP07686 556 aa5.81□□□□□ -1.48
SCN1A-203ENST00000409050 CREB1P16220 341 aa5.81□□□□□ -1.48
SCN1A-203ENST00000409050 MMP12P39900 470 aa5.81□□□□□ -1.48
SCN1A-203ENST00000409050 CD97P48960 835 aa5.81□□□□□ -1.48
SCN1A-203ENST00000409050 CASP6P55212 293 aa5.81□□□□□ -1.48
SCN1A-203ENST00000409050 RPL23AP62750 156 aaKnown RBP5.81□□□□□ -1.48
SCN1A-203ENST00000409050 FPGSQ05932 587 aa5.81□□□□□ -1.48
SCN1A-203ENST00000409050 ELAVL3Q14576 367 aaKnown RBP5.81□□□□□ -1.48
SCN1A-203ENST00000409050 GRM7Q14831 915 aa5.81□□□□□ -1.48
SCN1A-203ENST00000409050 BCL2L15Q5TBC7 163 aa5.81□□□□□ -1.48
SCN1A-203ENST00000409050 ACBD4Q8NC06 268 aa5.81□□□□□ -1.48
SCN1A-203ENST00000409050 PDLIM5Q96HC4 596 aaKnown RBP5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms