RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 OR14A16Q8NHC5 309 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 C16orf52Q8NHV5 167 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 CCDC26Q8TAB7 109 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 HMGCLL1Q8TB92 370 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 M1APQ8TC57 530 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 KIFAP3Q92845 792 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 DAZLQ92904 295 aaKnown RBP3.74□□□□□ -1.81
HMGB1-204ENST00000399489 SLCO2A1Q92959 643 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 TM4SF19Q96DZ7 209 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 THOC1Q96FV9 657 aaKnown RBP3.74□□□□□ -1.81
HMGB1-204ENST00000399489 DUX5Q96PT3 197 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 TRNT1Q96Q11 434 aaKnown RBP3.74□□□□□ -1.81
HMGB1-204ENST00000399489 CYTH2Q99418 400 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 FUNDC2Q9BWH2 189 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 BBS2Q9BXC9 721 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 TSGA10Q9BZW7 698 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 BICC1Q9H694 974 aaKnown RBP3.74□□□□□ -1.81
HMGB1-204ENST00000399489 MARCH7Q9H992 704 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 ZDHHC18Q9NUE0 388 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 SPHK1Q9NYA1 384 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 WWOXQ9NZC7 414 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 PTTG2Q9NZH5 202 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 MTCH1Q9NZJ7 389 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 TINAGQ9UJW2 476 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 ADAM28Q9UKQ2 775 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 ZNF346Q9UL40 294 aaKnown RBP3.74□□□□□ -1.81
HMGB1-204ENST00000399489 LOXL2Q9Y4K0 774 aa3.74□□□□□ -1.81
HMGB1-204ENST00000399489 PRG4Q92954 1404 aaPredicted RBP3.74□□□□□ -1.81
HMGB1-204ENST00000399489 ABCA5Q8WWZ7 1642 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 A0A1B0GVL5 298 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 A0A1W2PPV4 95 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 CCDC162PA2VCL2 907 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 ANTXRLA6NF34 631 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 E9PMD0 336 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 SGK494L7N484 410 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 RHODO00212 210 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 DVL1O14640 695 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 ZNF197O14709 1029 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 ARPC1BO15143 372 aaKnown RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 CHMP2AO43633 222 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 JAK2O60674 1132 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 CLPTM1O96005 669 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 PLAUP00749 431 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 EPOP01588 193 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 MBP02144 154 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 PLEKP08567 350 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 HIST1H2AGP0C0S8 130 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 ENO3P13929 434 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 LCN1P31025 176 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 HNRNPH1P31943 449 aaKnown RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 KCNJ4P48050 445 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 MAZP56270 477 aaKnown RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 YWHAEP62258 255 aaKnown RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 TWIST1Q15672 202 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 EFNB3Q15768 340 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 Q4G0T1 1027 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 ELFN2Q5R3F8 820 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 FUT10Q6P4F1 479 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 FAM173BQ6P4H8 233 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 KCTD18Q6PI47 426 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 SASS6Q6UVJ0 657 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 ZNF841Q6ZN19 808 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 Q75L30 129 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 NLRP9Q7RTR0 991 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 DPY19L4Q7Z388 723 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 KIAA1328Q86T90 577 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 VRK2Q86Y07 508 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 ZNF444Q8N0Y2 327 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 MAB21L3Q8N8X9 362 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 FAM83FQ8NEG4 500 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 OR6M1Q8NGM8 313 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 OR10Q1Q8NGQ4 319 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 OR6S1Q8NH40 331 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 ANGPTL6Q8NI99 470 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 NDNFQ8TB73 568 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 ELMO1Q92556 727 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 P3H4Q92791 437 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 HIST1H2ACQ93077 130 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 CXorf58Q96LI9 332 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 SGK494Q96LW2 274 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 INPP4AQ96PE3 977 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 DEFB118Q96PH6 123 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 ACCSQ96QU6 501 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 NDNQ99608 321 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 NDUFAF3Q9BU61 184 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 API5Q9BZZ5 524 aaKnown RBP3.73□□□□□ -1.81
HMGB1-204ENST00000399489 IL22Q9GZX6 179 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 EBF3Q9H4W6 596 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 C5orf66Q9H5L9 145 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 C10orf88Q9H8K7 445 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 PCDH9Q9HC56 1237 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 MCCC2Q9HCC0 563 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 CNGB3Q9NQW8 809 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 MAN2C1Q9NTJ4 1040 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 LHX3Q9UBR4 397 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 CTSFQ9UBX1 484 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 EPHA6Q9UF33 1036 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 RNF24Q9Y225 148 aa3.73□□□□□ -1.81
HMGB1-204ENST00000399489 SPIN1Q9Y657 262 aaPredicted RBP3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms