RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ADIPOR1Q96A54 375 aa20.08■□□□□ 0.8
CLN3-207ENST00000395653 SGCZQ96LD1 299 aa20.08■□□□□ 0.8
CLN3-207ENST00000395653 GLIPR2Q9H4G4 154 aa20.08■□□□□ 0.8
CLN3-207ENST00000395653 TIMMDC1Q9NPL8 285 aa20.08■□□□□ 0.8
CLN3-207ENST00000395653 ZNF446Q9NWS9 450 aa20.08■□□□□ 0.8
CLN3-207ENST00000395653 NOP53Q9NZM5 478 aaKnown RBP20.08■□□□□ 0.8
CLN3-207ENST00000395653 BCAP29Q9UHQ4 241 aa20.08■□□□□ 0.8
CLN3-207ENST00000395653 KLF13Q9Y2Y9 288 aaPredicted RBP20.08■□□□□ 0.8
CLN3-207ENST00000395653 UBR5O95071 2799 aaPredicted RBP20.07■□□□□ 0.8
CLN3-207ENST00000395653 UQCRHLA0A096LP55 91 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 SLCO1B7G3V0H7 640 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 PYCARD-AS1I3L0S3 204 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 HDAC3O15379 428 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 PDPK1O15530 556 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 PLOD3O60568 738 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 VPS4BO75351 444 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 GPX3P22352 226 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 DUSP8Q13202 625 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 MAPKAPK3Q16644 382 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 MDGA2Q7Z553 956 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 TAGAPQ8N103 731 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 GOLM1Q8NBJ4 401 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 FAM98AQ8NCA5 519 aaKnown RBP20.07■□□□□ 0.8
CLN3-207ENST00000395653 SIMC1Q8NDZ2 872 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 OR52R1Q8NGF1 315 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 KAT2AQ92830 837 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 AMDHD1Q96NU7 426 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 SH3BP4Q9P0V3 963 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 PRODH2Q9UF12 536 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 ATP6V1HQ9UI12 483 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 VPS4AQ9UN37 437 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 NBASA2RRP1 2371 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 CROCCQ5TZA2 2017 aa20.07■□□□□ 0.8
CLN3-207ENST00000395653 SHANK1Q9Y566 2161 aa20.06■□□□□ 0.8
CLN3-207ENST00000395653 MYO18BQ8IUG5 2567 aa20.06■□□□□ 0.8
CLN3-207ENST00000395653 ASPDHA6ND91 283 aa20.06■□□□□ 0.8
CLN3-207ENST00000395653 SCAMP2O15127 329 aaKnown RBP20.06■□□□□ 0.8
CLN3-207ENST00000395653 CRYABP02511 175 aaKnown RBP20.06■□□□□ 0.8
CLN3-207ENST00000395653 IFI6P09912 130 aa20.06■□□□□ 0.8
CLN3-207ENST00000395653 ZNF385BQ569K4 471 aa20.06■□□□□ 0.8
CLN3-207ENST00000395653 ANKRD26P1Q6NSI1 321 aa20.06■□□□□ 0.8
CLN3-207ENST00000395653 LYPD8Q6UX82 237 aa20.06■□□□□ 0.8
CLN3-207ENST00000395653 RTL4Q6ZR62 310 aa20.06■□□□□ 0.8
CLN3-207ENST00000395653 PSD4Q8NDX1 1056 aa20.06■□□□□ 0.8
CLN3-207ENST00000395653 LRRC8CQ8TDW0 803 aa20.06■□□□□ 0.8
CLN3-207ENST00000395653 SPACA9Q96E40 222 aaPredicted RBP20.06■□□□□ 0.8
CLN3-207ENST00000395653 OLAHQ9NV23 265 aa20.06■□□□□ 0.8
CLN3-207ENST00000395653 MARCOQ9UEW3 520 aaPredicted RBP20.06■□□□□ 0.8
CLN3-207ENST00000395653 DTX4Q9Y2E6 619 aa20.06■□□□□ 0.8
CLN3-207ENST00000395653 A0A087WV62 115 aa20.05■□□□□ 0.8
CLN3-207ENST00000395653 TRPC5OSA6NMA1 111 aa20.05■□□□□ 0.8
CLN3-207ENST00000395653 PLOD2O00469 737 aa20.05■□□□□ 0.8
CLN3-207ENST00000395653 FBXO45P0C2W1 286 aa20.05■□□□□ 0.8
CLN3-207ENST00000395653 G6PDP11413 515 aa20.05■□□□□ 0.8
CLN3-207ENST00000395653 PRPS1L1P21108 318 aa20.05■□□□□ 0.8
CLN3-207ENST00000395653 FRKP42685 505 aaPredicted RBP20.05■□□□□ 0.8
CLN3-207ENST00000395653 EMDP50402 254 aa20.05■□□□□ 0.8
CLN3-207ENST00000395653 NR0B1P51843 470 aaKnown RBP20.05■□□□□ 0.8
CLN3-207ENST00000395653 ZNF791Q3KP31 576 aaPredicted RBP20.05■□□□□ 0.8
CLN3-207ENST00000395653 FHL5Q5TD97 284 aa20.05■□□□□ 0.8
CLN3-207ENST00000395653 ZNF324BQ6AW86 544 aaPredicted RBP20.05■□□□□ 0.8
CLN3-207ENST00000395653 LARP4Q71RC2 724 aaKnown RBP eCLIP20.05■□□□□ 0.81e-6■□□□□ 8.2
CLN3-207ENST00000395653 OR7G2Q8NG99 324 aa20.05■□□□□ 0.8
CLN3-207ENST00000395653 PIWIL2Q8TC59 973 aaKnown RBP20.05■□□□□ 0.8
CLN3-207ENST00000395653 NR4A3Q92570 626 aa20.05■□□□□ 0.8
CLN3-207ENST00000395653 SLX1AQ9BQ83 275 aa20.05■□□□□ 0.8
CLN3-207ENST00000395653 ITPAQ9BY32 194 aa20.05■□□□□ 0.8
CLN3-207ENST00000395653 INTS9Q9NV88 658 aaKnown RBP20.05■□□□□ 0.8
CLN3-207ENST00000395653 TCP11X1B4DZS4 312 aa20.04■□□□□ 0.8
CLN3-207ENST00000395653 KLRC4-KLRK1H3BQV0 150 aa20.04■□□□□ 0.8
CLN3-207ENST00000395653 SDHDO14521 159 aa20.04■□□□□ 0.8
CLN3-207ENST00000395653 KITP10721 976 aa20.04■□□□□ 0.8
CLN3-207ENST00000395653 LBPP18428 481 aa20.04■□□□□ 0.8
CLN3-207ENST00000395653 NRG3P56975 720 aa20.04■□□□□ 0.8
CLN3-207ENST00000395653 C21orf58P58505 322 aa20.04■□□□□ 0.8
CLN3-207ENST00000395653 DCAF7P61962 342 aa20.04■□□□□ 0.8
CLN3-207ENST00000395653 PMP22Q01453 160 aa20.04■□□□□ 0.8
CLN3-207ENST00000395653 OGFOD2Q6N063 350 aa20.04■□□□□ 0.8
CLN3-207ENST00000395653 WDR75Q8IWA0 830 aaKnown RBP20.04■□□□□ 0.8
CLN3-207ENST00000395653 RIMKLAQ8IXN7 391 aa20.04■□□□□ 0.8
CLN3-207ENST00000395653 ZFP28Q8NHY6 868 aa20.04■□□□□ 0.8
CLN3-207ENST00000395653 DYDC1Q8WWB3 177 aa20.04■□□□□ 0.8
CLN3-207ENST00000395653 ZBED6CLQ96FA7 236 aaPredicted RBP20.04■□□□□ 0.8
CLN3-207ENST00000395653 C7orf26Q96N11 449 aa20.04■□□□□ 0.8
CLN3-207ENST00000395653 FRMD6Q96NE9 622 aa20.04■□□□□ 0.8
CLN3-207ENST00000395653 ANKRA2Q9H9E1 313 aa20.04■□□□□ 0.8
CLN3-207ENST00000395653 ACSS1Q9NUB1 689 aaPredicted RBP20.04■□□□□ 0.8
CLN3-207ENST00000395653 MAPRE3Q9UPY8 281 aa20.04■□□□□ 0.8
CLN3-207ENST00000395653 CAPN14A8MX76 684 aa20.03■□□□□ 0.8
CLN3-207ENST00000395653 COQ9O75208 318 aa20.03■□□□□ 0.8
CLN3-207ENST00000395653 MC3RP41968 323 aa20.03■□□□□ 0.8
CLN3-207ENST00000395653 PPICP45877 212 aa20.03■□□□□ 0.8
CLN3-207ENST00000395653 CLDN8P56748 225 aa20.03■□□□□ 0.8
CLN3-207ENST00000395653 TMEM107Q6UX40 140 aa20.03■□□□□ 0.8
CLN3-207ENST00000395653 PNPLA5Q7Z6Z6 429 aaPredicted RBP20.03■□□□□ 0.8
CLN3-207ENST00000395653 NATD1Q8N6N6 113 aa20.03■□□□□ 0.8
CLN3-207ENST00000395653 CIDECQ96AQ7 238 aaPredicted RBP20.03■□□□□ 0.8
CLN3-207ENST00000395653 ELP4Q96EB1 424 aa20.03■□□□□ 0.8
CLN3-207ENST00000395653 LCORQ96JN0 433 aaPredicted RBP20.03■□□□□ 0.8
CLN3-207ENST00000395653 NXF5Q9H1B4 397 aaKnown RBP20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms