RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 KRT33AO76009 404 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 CAPZBP47756 277 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 OR1E2P47887 323 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 SERPINB10P48595 397 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 LTB4RQ15722 352 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 ATP6AP1Q15904 470 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 SGCBQ16585 318 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 NKAIN1Q4KMZ8 207 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 GCNT6Q5T4J0 391 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 PRSS41Q7RTY9 318 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 IGFN1Q86VF2 1251 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 NAXDQ8IW45 347 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 LINC01555Q8NAE3 123 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 OR5D16Q8NGK9 328 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 TMEM125Q96AQ2 219 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 TBC1D20Q96BZ9 403 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 CHST8Q9H2A9 424 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 SEMA6CQ9H3T2 930 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 TNFRSF12AQ9NP84 129 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 RHCGQ9UBD6 479 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 ATP6V1HQ9UI12 483 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 PADI2Q9Y2J8 665 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 GREB1Q4ZG55 1949 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 A0A1B0GTQ1 180 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 SUV39H1O43463 412 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 SULT1C4O75897 302 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 MT-CO3P00414 261 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 CYP4B1P13584 511 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 PKLRP30613 574 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 RRM2P31350 389 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 TAS2R41P59536 307 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 EMX2Q04743 252 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 ZNF33BQ06732 778 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 TUBA3CQ13748 450 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 ARHGAP19Q14CB8 494 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 LAIR1Q6GTX8 287 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 IQCHQ86VS3 1027 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 CYP4Z1Q86W10 505 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 C11orf65Q8NCR3 313 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 REXO5Q96IC2 774 aaKnown RBP9.72□□□□□ -0.85
COL6A3-205ENST00000392004 OR4K3Q96R72 315 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 DOK1Q99704 481 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 Q9N2J8 555 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 AGPAT4Q9NRZ5 378 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 ACTR3BQ9P1U1 418 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 C19orf25Q9UFG5 118 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-205ENST00000392004 POLR1DQ9Y2S0 133 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 RBMX2Q9Y388 322 aaKnown RBP9.72□□□□□ -0.85
COL6A3-205ENST00000392004 TESMINQ9Y4I5 508 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 ATG4BQ9Y4P1 393 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 IGHV1OR21-1A0A087WYE8 117 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 PLD2O14939 933 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 SOX30O94993 753 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 SAGP10523 405 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-205ENST00000392004 SERPINB1P30740 379 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 ARSFP54793 590 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 GPLD1P80108 840 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 PRAMEF20Q5VT98 475 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 IL20RBQ6UXL0 311 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 ADCK1Q86TW2 530 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 SLC15A3Q8IY34 581 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 ZCCHC7Q8N3Z6 543 aaKnown RBP9.72□□□□□ -0.85
COL6A3-205ENST00000392004 OR6C4Q8NGE1 309 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 SNIP1Q8TAD8 396 aaKnown RBP9.72□□□□□ -0.85
COL6A3-205ENST00000392004 PHF10Q8WUB8 498 aaKnown RBP9.72□□□□□ -0.85
COL6A3-205ENST00000392004 S100ZQ8WXG8 99 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 ZNF347Q96SE7 839 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 ZNF607Q96SK3 696 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 INPP5KQ9BT40 448 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 TSPAN10Q9H1Z9 355 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-205ENST00000392004 MEAF6Q9HAF1 191 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 GPRC5BQ9NZH0 403 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 PPIL1Q9Y3C6 166 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 HCRTR2O43614 444 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 PAPLNO95428 1278 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 TSPAN12O95859 305 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 SOD1P00441 154 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 SDC1P18827 310 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 BTG2P78543 158 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 SPIBQ01892 262 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 SRYQ05066 204 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 TGIF1Q15583 401 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 INAQ16352 499 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 PLEKHM3Q6ZWE6 761 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 CDK20Q8IZL9 346 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 ZNF555Q8NEP9 628 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 NUP43Q8NFH3 380 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 NFKBIDQ8NI38 313 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 EFHD2Q96C19 240 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-205ENST00000392004 DGCR6LQ9BY27 220 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 SLC35C2Q9NQQ7 365 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 H2AFY2Q9P0M6 372 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-205ENST00000392004 FBXO4Q9UKT5 387 aa9.72□□□□□ -0.85
COL6A3-205ENST00000392004 ELOVL7A1L3X0 281 aa9.71□□□□□ -0.85
COL6A3-205ENST00000392004 EIF3FO00303 357 aaPredicted RBP9.71□□□□□ -0.85
COL6A3-205ENST00000392004 ARPC2O15144 300 aa9.71□□□□□ -0.85
COL6A3-205ENST00000392004 PGRMC2O15173 223 aa9.71□□□□□ -0.85
COL6A3-205ENST00000392004 SEC14L5O43304 696 aa9.71□□□□□ -0.85
COL6A3-205ENST00000392004 CTSVO60911 334 aa9.71□□□□□ -0.85
COL6A3-205ENST00000392004 OXSR1O95747 527 aaPredicted RBP9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms