RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 TXNDC5Q8NBS9 432 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 CNIH3Q8TBE1 160 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 ZDHHC1Q8WTX9 485 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 KCNK13Q9HB14 408 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 OR2S2Q9NQN1 319 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 RLIMQ9NVW2 624 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 GABBR2O75899 941 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 JUNDP17535 347 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 GABARAPL2P60520 117 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 MZT1Q08AG7 82 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 C6orf136Q5SQH8 315 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 KRTCAP2Q8N6L1 136 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 RADILQ96JH8 1075 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 EFCAB7A8K855 629 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 SNU13P55769 128 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 RAB4BP61018 213 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 INCA1Q0VD86 236 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 AKR1C8PQ5T2L2 129 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 TTLL10Q6ZVT0 673 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 OR6Q1Q8NGQ2 317 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 PXYLP1Q8TE99 480 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 NPY6RQ99463 290 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 SMOQ99835 787 aa12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 AJAP1Q9UKB5 411 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-204ENST00000389857 A0A1W2PPK0 400 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 POU3F4P49335 361 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 MFSD13AQ14CX5 517 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 SFT2D3Q587I9 215 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 C6orf183Q5T699 404 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 DUOX1Q9NRD9 1551 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 A8MV72 311 aaPredicted RBP12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 NPC1O15118 1278 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 SCAMP2O15127 329 aaKnown RBP12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 SSX4O60224 188 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 CNTN5O94779 1100 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 MAS1P04201 325 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 HNRNPA1P09651 372 aaKnown RBP eCLIP12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 MAP2K4P45985 399 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 HNRNPKP61978 463 aaKnown RBP eCLIP12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 NKX3-2P78367 333 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 NIPAL4Q0D2K0 466 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 NXPE4Q6UWF7 544 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 KLBQ86Z14 1044 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 UEVLDQ8IX04 471 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 OR2T4Q8NH00 348 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 OR51A7Q8NH64 312 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 MSANTD3Q96H12 275 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 RNF39Q9H2S5 420 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 ABCC6O95255 1503 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 A0A1W2PP55 124 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 CD1DP15813 335 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 DNASE1P24855 282 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 ACVR1BP36896 505 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 RRAS2P62070 204 aaPredicted RBP12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 PTPRRQ15256 657 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 GPR139Q6DWJ6 353 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 TRIM74Q86UV6 250 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 OR9A4Q8NGU2 314 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 VRK1Q99986 396 aaPredicted RBP12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 HERPUD2Q9BSE4 406 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 MINDY3Q9H8M7 445 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 TMEM100Q9NV29 134 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 RARRES3Q9UL19 164 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 LAMTOR5O43504 91 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 BEST1O76090 585 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 SCGB2A2Q13296 93 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 MANEALQ5VSG8 457 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 UNC5DQ6UXZ4 953 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 TMEM246Q9BRR3 403 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 BCAS3Q9H6U6 928 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 FOLH1BQ9HBA9 442 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 CDH20Q9HBT6 801 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 LRFN1Q9P244 771 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 EDARQ9UNE0 448 aa12.21□□□□□ -0.45
CCDC88C-204ENST00000389857 ARL6IP1Q15041 203 aa12.21□□□□□ -0.46
CCDC88C-204ENST00000389857 RPS27LQ71UM5 84 aaKnown RBP12.21□□□□□ -0.46
CCDC88C-204ENST00000389857 OR52E2Q8NGJ4 325 aa12.21□□□□□ -0.46
CCDC88C-204ENST00000389857 OR8J1Q8NGP2 316 aa12.21□□□□□ -0.46
CCDC88C-204ENST00000389857 WRAP73Q9P2S5 460 aaPredicted RBP12.21□□□□□ -0.46
CCDC88C-204ENST00000389857 HSPE1-MOB4S4R3N1 261 aa12.21□□□□□ -0.46
CCDC88C-204ENST00000389857 ZNF43P17038 809 aa12.21□□□□□ -0.46
CCDC88C-204ENST00000389857 LMAN2Q12907 356 aa12.21□□□□□ -0.46
CCDC88C-204ENST00000389857 APOFQ13790 326 aa12.21□□□□□ -0.46
CCDC88C-204ENST00000389857 LEG1Q6P5S2 330 aa12.21□□□□□ -0.46
CCDC88C-204ENST00000389857 JPH3Q8WXH2 748 aaPredicted RBP12.21□□□□□ -0.46
CCDC88C-204ENST00000389857 FBRSQ9HAH7 460 aa12.21□□□□□ -0.46
CCDC88C-204ENST00000389857 AP1M2Q9Y6Q5 423 aa12.21□□□□□ -0.46
CCDC88C-204ENST00000389857 RBM39Q14498 530 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 UBE2UQ5VVX9 321 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 SLC22A10Q63ZE4 541 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 TXNRD3NBQ6F5E7 133 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 MARVELD2Q8N4S9 558 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 CCDC32Q9BV29 185 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 GRPRP30550 384 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 GKP32189 559 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 OLIG2Q13516 323 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 RCAN2Q14206 197 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 TWNKQ96RR1 684 aa12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 SETD1AO15047 1707 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-204ENST00000389857 IFT172Q9UG01 1749 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms