RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 CNRIP1Q96F85 164 aaPredicted RBP20.28■□□□□ 0.84
TRIM54-202ENST00000380075 CRELD1Q96HD1 420 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 PLEKHA8Q96JA3 519 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 ROGDIQ9GZN7 287 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 USP36Q9P275 1121 aaKnown RBP20.28■□□□□ 0.84
TRIM54-202ENST00000380075 CYP8B1Q9UNU6 501 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 B3GNT3Q9Y2A9 372 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 VPS13AQ96RL7 3174 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 DOCK9Q9BZ29 2069 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 A0A0G2JPF8 293 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 EFCAB10A6NFE3 127 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 HNRNPCL2B2RXH8 293 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 HNRNPCL3B7ZW38 293 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 CASC3O15234 703 aaKnown RBP20.28■□□□□ 0.84
TRIM54-202ENST00000380075 ZW10O43264 779 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 SLITRK5O94991 958 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 ZBTB11O95625 1053 aaPredicted RBP20.28■□□□□ 0.84
TRIM54-202ENST00000380075 HNRNPCL4P0DMR1 293 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 CD36P16671 472 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 HNRNPA2B1P22626 353 aaKnown RBP20.28■□□□□ 0.84
TRIM54-202ENST00000380075 NR4A1P22736 598 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 CERS1P27544 350 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 TGFBR2P37173 567 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 UGT2B15P54855 530 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 ILKQ13418 452 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 DEF8Q6ZN54 512 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 STX19Q8N4C7 294 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 FAM46DQ8NEK8 389 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 OR5D16Q8NGK9 328 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 C3orf14Q9HBI5 128 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 CLN6Q9NWW5 311 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 APOBEC3BQ9UH17 382 aaKnown RBP20.28■□□□□ 0.84
TRIM54-202ENST00000380075 NDOR1Q9UHB4 597 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 FBXW2Q9UKT8 454 aa20.28■□□□□ 0.84
TRIM54-202ENST00000380075 CCDC163A0A0D9SF12 145 aa20.27■□□□□ 0.84
TRIM54-202ENST00000380075 A0A1W2PRQ8 180 aa20.27■□□□□ 0.84
TRIM54-202ENST00000380075 PGRMC2O15173 223 aa20.27■□□□□ 0.84
TRIM54-202ENST00000380075 EMC8O43402 210 aa20.27■□□□□ 0.84
TRIM54-202ENST00000380075 PROM1O43490 865 aa20.27■□□□□ 0.84
TRIM54-202ENST00000380075 ASNA1O43681 348 aa20.27■□□□□ 0.84
TRIM54-202ENST00000380075 LCKP06239 509 aa20.27■□□□□ 0.84
TRIM54-202ENST00000380075 HOXB3P14651 431 aaPredicted RBP20.27■□□□□ 0.84
TRIM54-202ENST00000380075 ZNF12P17014 697 aa20.27■□□□□ 0.84
TRIM54-202ENST00000380075 SLC19A1P41440 591 aa20.27■□□□□ 0.84
TRIM54-202ENST00000380075 KIR2DS3Q14952 304 aa20.27■□□□□ 0.84
TRIM54-202ENST00000380075 ZNF528Q3MIS6 628 aa20.27■□□□□ 0.84
TRIM54-202ENST00000380075 SLCO6A1Q86UG4 719 aa20.27■□□□□ 0.84
TRIM54-202ENST00000380075 NRROSQ86YC3 692 aa20.27■□□□□ 0.84
TRIM54-202ENST00000380075 OR4E2Q8NGC2 313 aa20.27■□□□□ 0.84
TRIM54-202ENST00000380075 S100ZQ8WXG8 99 aa20.27■□□□□ 0.84
TRIM54-202ENST00000380075 FUZQ9BT04 418 aa20.27■□□□□ 0.84
TRIM54-202ENST00000380075 TWSG1Q9GZX9 223 aa20.27■□□□□ 0.84
TRIM54-202ENST00000380075 SRMSQ9H3Y6 488 aa20.27■□□□□ 0.84
TRIM54-202ENST00000380075 UGT2B17O75795 530 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 CLDN2P57739 230 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 OLR1P78380 273 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 ZNF846Q147U1 533 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 C16orf87Q6PH81 154 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 WDR5BQ86VZ2 330 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 SAMD14Q8IZD0 417 aaPredicted RBP20.26■□□□□ 0.83
TRIM54-202ENST00000380075 NR4A3Q92570 626 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 HSPBAP1Q96EW2 488 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 MACROD1Q9BQ69 325 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 RSPO3Q9BXY4 272 aaPredicted RBP20.26■□□□□ 0.83
TRIM54-202ENST00000380075 WDR12Q9GZL7 423 aaKnown RBP20.26■□□□□ 0.83
TRIM54-202ENST00000380075 ANKHQ9HCJ1 492 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 HMG20AQ9NP66 347 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 CALML5Q9NZT1 146 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 ZNF780BQ9Y6R6 833 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 GLOD5A6NK44 160 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 OR10H3O60404 316 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 SEMA7AO75326 666 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 ZNF217O75362 1048 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 PRKRAO75569 313 aaKnown RBP20.26■□□□□ 0.83
TRIM54-202ENST00000380075 STATHP02808 62 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 HMGN2P05204 90 aaKnown RBP20.26■□□□□ 0.83
TRIM54-202ENST00000380075 C21orf33P30042 268 aaPredicted RBP20.26■□□□□ 0.83
TRIM54-202ENST00000380075 YPEL5P62699 121 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 SRSF5Q13243 272 aaKnown RBP20.26■□□□□ 0.83
TRIM54-202ENST00000380075 GPR19Q15760 415 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 NDUFA9Q16795 377 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 PTCHD4Q6ZW05 846 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 ASPGQ86U10 573 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 CCDC116Q8IYX3 515 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 VANGL1Q8TAA9 524 aaPredicted RBP20.26■□□□□ 0.83
TRIM54-202ENST00000380075 DYNC2LI1Q8TCX1 351 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 PINK1Q9BXM7 581 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 PRDM9Q9NQV7 894 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 ZNF624Q9P2J8 865 aaPredicted RBP20.26■□□□□ 0.83
TRIM54-202ENST00000380075 ANKMY1Q9P2S6 941 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 REV1Q9UBZ9 1251 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 A4GNTQ9UNA3 340 aa20.26■□□□□ 0.83
TRIM54-202ENST00000380075 CLDN25C9JDP6 229 aa20.25■□□□□ 0.83
TRIM54-202ENST00000380075 PIPP12273 146 aaPredicted RBP20.25■□□□□ 0.83
TRIM54-202ENST00000380075 FUT4P22083 530 aa20.25■□□□□ 0.83
TRIM54-202ENST00000380075 ACSL1P33121 698 aa20.25■□□□□ 0.83
TRIM54-202ENST00000380075 PRKAG1P54619 331 aa20.25■□□□□ 0.83
TRIM54-202ENST00000380075 MLLT10P55197 1068 aa20.25■□□□□ 0.83
TRIM54-202ENST00000380075 RAB8AP61006 207 aa20.25■□□□□ 0.83
TRIM54-202ENST00000380075 SNRPGP62308 76 aaKnown RBP20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms