RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 A8MVJ9 347 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 GADD45GO95257 159 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 IFNW1P05000 195 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 SERPIND1P05546 499 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 ACVR2AP27037 513 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 PUM1Q14671 1186 aaKnown RBP eCLIP14.65□□□□□ -0.06
CCDC40-202ENST00000374876 ANKDD1AQ495B1 522 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 P2RY8Q86VZ1 359 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 SLC35F3Q8IY50 421 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 PHF10Q8WUB8 498 aaKnown RBP14.65□□□□□ -0.06
CCDC40-202ENST00000374876 EXOSC8Q96B26 276 aaKnown RBP14.65□□□□□ -0.06
CCDC40-202ENST00000374876 YIPF6Q96EC8 236 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 PLEKHA8Q96JA3 519 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 INSM2Q96T92 566 aaPredicted RBP14.65□□□□□ -0.06
CCDC40-202ENST00000374876 NIPSNAP1Q9BPW8 284 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 A4GALTQ9NPC4 353 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 ACER3Q9NUN7 267 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 IMP3Q9NV31 184 aaKnown RBP14.65□□□□□ -0.06
CCDC40-202ENST00000374876 C5AR2Q9P296 337 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 U3KQA8 63 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 M0R3G1 203 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 BCHEP06276 602 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 CEACAM1P13688 526 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 RHCEP18577 417 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 GSTM5P46439 218 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 IDH2P48735 452 aaKnown RBP14.65□□□□□ -0.06
CCDC40-202ENST00000374876 SIM1P81133 766 aaPredicted RBP14.65□□□□□ -0.06
CCDC40-202ENST00000374876 DAB2P98082 770 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 KCNC4Q03721 635 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 DMPKQ09013 629 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 KRT33BQ14525 404 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 GANABQ14697 944 aaKnown RBP14.65□□□□□ -0.06
CCDC40-202ENST00000374876 SLC44A2Q8IWA5 706 aaPredicted RBP14.65□□□□□ -0.06
CCDC40-202ENST00000374876 HORMAD2Q8N7B1 307 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 OR9Q2Q8NGE9 314 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 ZDHHC1Q8WTX9 485 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 SLC38A5Q8WUX1 472 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 ZBED6CLQ96FA7 236 aaPredicted RBP14.65□□□□□ -0.06
CCDC40-202ENST00000374876 CDC6Q99741 560 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 COPS4Q9BT78 406 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 LHX9Q9NQ69 397 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 NECTIN3Q9NQS3 549 aa14.65□□□□□ -0.06
CCDC40-202ENST00000374876 CPED1A4D0V7 1026 aa14.64□□□□□ -0.07
CCDC40-202ENST00000374876 PCDH17O14917 1159 aa14.64□□□□□ -0.07
CCDC40-202ENST00000374876 TNFSF14O43557 240 aa14.64□□□□□ -0.07
CCDC40-202ENST00000374876 TMPRSS11DO60235 418 aa14.64□□□□□ -0.07
CCDC40-202ENST00000374876 CCNB2O95067 398 aa14.64□□□□□ -0.07
CCDC40-202ENST00000374876 RAB28P51157 221 aa14.64□□□□□ -0.07
CCDC40-202ENST00000374876 PCBP4P57723 403 aaKnown RBP14.64□□□□□ -0.07
CCDC40-202ENST00000374876 CSNK1G2P78368 415 aa14.64□□□□□ -0.07
CCDC40-202ENST00000374876 OCA2Q04671 838 aa14.64□□□□□ -0.07
CCDC40-202ENST00000374876 DUSP7Q16829 419 aa14.64□□□□□ -0.07
CCDC40-202ENST00000374876 RPS26P11Q5JNZ5 115 aaPredicted RBP14.64□□□□□ -0.07
CCDC40-202ENST00000374876 OGFOD3Q6PK18 319 aa14.64□□□□□ -0.07
CCDC40-202ENST00000374876 C6orf120Q7Z4R8 191 aa14.64□□□□□ -0.07
CCDC40-202ENST00000374876 PLD3Q8IV08 490 aa14.64□□□□□ -0.07
CCDC40-202ENST00000374876 TAGAPQ8N103 731 aa14.64□□□□□ -0.07
CCDC40-202ENST00000374876 DEPDC4Q8N2C3 294 aa14.64□□□□□ -0.07
CCDC40-202ENST00000374876 SLC15A4Q8N697 577 aa14.64□□□□□ -0.07
CCDC40-202ENST00000374876 FAM181AQ8N9Y4 354 aa14.64□□□□□ -0.07
CCDC40-202ENST00000374876 UTP15Q8TED0 518 aaKnown RBP14.64□□□□□ -0.07
CCDC40-202ENST00000374876 TRUB1Q8WWH5 349 aaKnown RBP14.64□□□□□ -0.07
CCDC40-202ENST00000374876 ABTB1Q969K4 478 aaPredicted RBP14.64□□□□□ -0.07
CCDC40-202ENST00000374876 TIMM29Q9BSF4 260 aa14.64□□□□□ -0.07
CCDC40-202ENST00000374876 XKR8Q9H6D3 395 aa14.64□□□□□ -0.07
CCDC40-202ENST00000374876 ADAM29Q9UKF5 820 aa14.64□□□□□ -0.07
CCDC40-202ENST00000374876 LCMT2O60294 686 aaKnown RBP14.63□□□□□ -0.07
CCDC40-202ENST00000374876 POU2F1P14859 743 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 LIMS1P48059 325 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 HMGA2P52926 109 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 MLLT10P55197 1068 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 MAZP56270 477 aaKnown RBP14.63□□□□□ -0.07
CCDC40-202ENST00000374876 LSM3P62310 102 aaKnown RBP14.63□□□□□ -0.07
CCDC40-202ENST00000374876 PRDX1Q06830 199 aaKnown RBP14.63□□□□□ -0.07
CCDC40-202ENST00000374876 FOXD4Q12950 439 aaPredicted RBP14.63□□□□□ -0.07
CCDC40-202ENST00000374876 OR4C11Q6IEV9 310 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 ZNF605Q86T29 641 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 SLCO6A1Q86UG4 719 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 PARP8Q8N3A8 854 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 RHOXF1Q8NHV9 184 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 MYDGFQ969H8 173 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 TMEM19Q96HH6 336 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 PALMDQ9NP74 551 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 PLCXD1Q9NUJ7 323 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 IMPAD1Q9NX62 359 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 TEX10Q9NXF1 929 aaPredicted RBP14.63□□□□□ -0.07
CCDC40-202ENST00000374876 TOR4AQ9NXH8 423 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 SCHIP1Q9P0W5 487 aaPredicted RBP14.63□□□□□ -0.07
CCDC40-202ENST00000374876 ENOPH1Q9UHY7 261 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 PSORS1C1Q9UIG5 152 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 CASC3O15234 703 aaKnown RBP14.63□□□□□ -0.07
CCDC40-202ENST00000374876 CLEC3AO75596 197 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 CKMT1AP12532 417 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 SSR2P43308 183 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 TP53BP2Q13625 1128 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 ADPRMQ3LIE5 342 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 MLIPQ5VWP3 458 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 GUSBP11Q6P575 273 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 UBE3DQ7Z6J8 389 aa14.63□□□□□ -0.07
CCDC40-202ENST00000374876 TTLQ8NG68 377 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms