RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 SIGLEC6O43699 453 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 SEMA3DO95025 777 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 PSMB5P28074 263 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 FOXA1P55317 472 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 CDKL1Q00532 357 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 GNPDA2Q8TDQ7 276 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 ECHDC3Q96DC8 303 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 RDH12Q96NR8 316 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 ASB16Q96NS5 453 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 INSM2Q96T92 566 aaPredicted RBP11□□□□□ -0.65
SYNE1-204ENST00000367248 NTMT1Q9BV86 223 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 ANTXRLA6NF34 631 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 MRPL3P09001 348 aaKnown RBP11□□□□□ -0.65
SYNE1-204ENST00000367248 CAPN3P20807 821 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 MMP12P39900 470 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 ROR2Q01974 943 aaKnown RBP11□□□□□ -0.65
SYNE1-204ENST00000367248 NPRL3Q12980 569 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 TSC22D1Q15714 1073 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 MARCH9Q86YJ5 346 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 SLC5A8Q8N695 610 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 FAM86B1Q8N7N1 296 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 WFDC5Q8TCV5 224 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 DMRT3Q9NQL9 472 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 MALT1Q9UDY8 824 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 COL18A1P39060 1754 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 C17orf113A0A1B0GUU1 675 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 ZDHHC11BP0C7U3 371 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 PRDX3P30048 256 aaKnown RBP11□□□□□ -0.65
SYNE1-204ENST00000367248 C9orf135Q5VTT2 229 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 DGLUCYQ7Z3D6 616 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 MCATQ8IVS2 390 aaKnown RBP11□□□□□ -0.65
SYNE1-204ENST00000367248 FAM174AQ8TBP5 190 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 BCL7CQ8WUZ0 217 aaPredicted RBP11□□□□□ -0.65
SYNE1-204ENST00000367248 OSTF1Q92882 214 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 R4GN57 208 aa11□□□□□ -0.65
SYNE1-204ENST00000367248 A0A1W2PRQ8 180 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 J3QLW9 94 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 ZNF19P17023 458 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 PSMD7P51665 324 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 IL20RBQ6UXL0 311 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 CDRT4Q8N9R6 151 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 HS6ST2Q96MM7 605 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 PARPBPQ9NWS1 579 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 HOXC11O43248 304 aaPredicted RBP10.99□□□□□ -0.65
SYNE1-204ENST00000367248 BRINP1O60477 761 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 ETFAP13804 333 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 SDC1P18827 310 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 GRPRP30550 384 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 MAT1AQ00266 395 aaKnown RBP10.99□□□□□ -0.65
SYNE1-204ENST00000367248 SMAD4Q13485 552 aaKnown RBP10.99□□□□□ -0.65
SYNE1-204ENST00000367248 RPE65Q16518 533 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 MEDAGQ5VYS4 303 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 SLC27A4Q6P1M0 643 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 GPR137CQ8N3F9 429 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 MEIOBQ8N635 442 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 DENND6BQ8NEG7 585 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 OR6N2Q8NGY6 317 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 TMEM45AQ9NWC5 275 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 GPR143P51810 404 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 KCNAB2Q13303 367 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 GBX1Q14549 363 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 ZNF440Q8IYI8 595 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 GNG8Q9UK08 70 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 A0A1W2PQ72 361 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 ISPDA4D126 451 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 DPPA5A6NC42 116 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 TTLL8A6PVC2 850 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 HTRA2O43464 458 aaPredicted RBP10.99□□□□□ -0.65
SYNE1-204ENST00000367248 DLX2Q07687 328 aaPredicted RBP10.99□□□□□ -0.65
SYNE1-204ENST00000367248 SLC3A1Q07837 685 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 ZSWIM9Q86XI8 627 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 METTL2AQ96IZ6 378 aaKnown RBP10.99□□□□□ -0.65
SYNE1-204ENST00000367248 SORBS1Q9BX66 1292 aaKnown RBP10.99□□□□□ -0.65
SYNE1-204ENST00000367248 C1QTNF1Q9BXJ1 281 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 ZNF451Q9Y4E5 1061 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 VSTM2BA6NLU5 285 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 TGFBR2P37173 567 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 NOVA1P51513 510 aaKnown RBP10.99□□□□□ -0.65
SYNE1-204ENST00000367248 ZNF84P51523 738 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 DSG2Q14126 1118 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 WSCD2Q2TBF2 565 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 SPIN3Q5JUX0 258 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 IDNKQ5T6J7 187 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 PNLDC1Q8NA58 520 aaKnown RBP10.99□□□□□ -0.65
SYNE1-204ENST00000367248 TM9SF4Q92544 642 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 TMEM203Q969S6 136 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 KCTD7Q96MP8 289 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 C2orf92A0A1B0GVN3 265 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 PRAMEF2O60811 474 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 HSD17B1P14061 328 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 EIF2DP41214 584 aaKnown RBP10.99□□□□□ -0.65
SYNE1-204ENST00000367248 RBPJQ06330 500 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 ZNF77Q15935 545 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 CTSL3PQ5NE16 218 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 DPY19L2P1Q6NXN4 242 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 FANK1Q8TC84 345 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 ZNF775Q96BV0 537 aaPredicted RBP10.99□□□□□ -0.65
SYNE1-204ENST00000367248 FBXL20Q96IG2 436 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 GINS4Q9BRT9 223 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 SRA1Q9HD15 236 aaKnown RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms