RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 TMEM201Q5SNT2 666 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 SRFBP1Q8NEF9 429 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 OR4E2Q8NGC2 313 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 MGLLQ99685 303 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 FNDC11Q9BVV2 318 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 ROGDIQ9GZN7 287 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 MAN2C1Q9NTJ4 1040 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 ENTPD4Q9Y227 616 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 SLC9A8Q9Y2E8 581 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 MDC1Q14676 2089 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 DSCR3O14972 297 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 ADAM23O75077 832 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 NME6O75414 186 aaPredicted RBP19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 FHP07954 510 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 DBTP11182 482 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 CSNK2A2P19784 350 aaPredicted RBP19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 ANXA11P50995 505 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 DOC2BQ14184 412 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 MED22Q15528 200 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 C19orf48Q6RUI8 117 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 Q96MT0 163 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 OR2M4Q96R27 311 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 CENPOQ9BU64 300 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 A0A0G2JPF8 293 aa19.61■□□□□ 0.73
CCDC88B-203ENST00000359902 A0A1W2PQF6 199 aa19.61■□□□□ 0.73
CCDC88B-203ENST00000359902 HNRNPCL2B2RXH8 293 aa19.61■□□□□ 0.73
CCDC88B-203ENST00000359902 HNRNPCL3B7ZW38 293 aa19.61■□□□□ 0.73
CCDC88B-203ENST00000359902 RFXAPO00287 272 aa19.61■□□□□ 0.73
CCDC88B-203ENST00000359902 ASGR2P07307 311 aa19.61■□□□□ 0.73
CCDC88B-203ENST00000359902 CHRM5P08912 532 aaPredicted RBP19.61■□□□□ 0.73
CCDC88B-203ENST00000359902 HNRNPCL4P0DMR1 293 aa19.61■□□□□ 0.73
CCDC88B-203ENST00000359902 COL9A1P20849 921 aa19.61■□□□□ 0.73
CCDC88B-203ENST00000359902 TSFMP43897 325 aaKnown RBP19.61■□□□□ 0.73
CCDC88B-203ENST00000359902 GNA13Q14344 377 aa19.61■□□□□ 0.73
CCDC88B-203ENST00000359902 ATAT1Q5SQI0 421 aa19.61■□□□□ 0.73
CCDC88B-203ENST00000359902 AMIGO1Q86WK6 493 aa19.61■□□□□ 0.73
CCDC88B-203ENST00000359902 OR56A1Q8NGH5 318 aa19.61■□□□□ 0.73
CCDC88B-203ENST00000359902 WDR36Q8NI36 951 aaKnown RBP19.61■□□□□ 0.73
CCDC88B-203ENST00000359902 MOAP1Q96BY2 351 aa19.61■□□□□ 0.73
CCDC88B-203ENST00000359902 CHCHD6Q9BRQ6 235 aa19.61■□□□□ 0.73
CCDC88B-203ENST00000359902 DNAJC27Q9NZQ0 273 aa19.61■□□□□ 0.73
CCDC88B-203ENST00000359902 DOLKQ9UPQ8 538 aa19.61■□□□□ 0.73
CCDC88B-203ENST00000359902 MAN2A2P49641 1150 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 CLDN2P57739 230 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 HYAL1Q12794 435 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 TCEA2Q15560 299 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 SDE2Q6IQ49 451 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 CASP12Q6UXS9 341 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 CD300LDQ6UXZ3 194 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 ZER1Q7Z7L7 766 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 IL17RCQ8NAC3 791 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 LCN9Q8WX39 176 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 ZNF681Q96N22 645 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 NXF2Q9GZY0 626 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 OR6C2Q9NZP2 312 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 KDM1AO60341 852 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 TNNI3P19429 210 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 MMP11P24347 488 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 MPIP34949 423 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 BUD31P41223 144 aaPredicted RBP19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 PPP5CP53041 499 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 STXBP1P61764 594 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 LSM11P83369 360 aaKnown RBP eCLIP19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 ALDH6A1Q02252 535 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 GPAT3Q53EU6 434 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 TJAP1Q5JTD0 557 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 ATCAYQ86WG3 371 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 AMER2Q8N7J2 671 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 KBTBD8Q8NFY9 601 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 OR4K5Q8NGD3 323 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 OR8J1Q8NGP2 316 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 OR1E3Q8WZA6 343 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 CDADC1Q9BWV3 514 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 QRSL1Q9H0R6 528 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 ANKRA2Q9H9E1 313 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 A3GALT2U3KPV4 340 aa19.6■□□□□ 0.73
CCDC88B-203ENST00000359902 XIRP2A4UGR9 3374 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 EMC8O43402 210 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 AK4P27144 223 aaPredicted RBP19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 BTN3A2P78410 334 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 COX10Q12887 443 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 CEBPEQ15744 281 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 TSTQ16762 297 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 PAQR7Q86WK9 346 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 TCEANCQ8N8B7 351 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 KCT2Q8NC54 265 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 MORN4Q8NDC4 146 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 KLHL6Q8WZ60 621 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 ELP4Q96EB1 424 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 FCRL4Q96PJ5 515 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 NKX2-4Q9H2Z4 354 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 KLF15Q9UIH9 416 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 MC3RP41968 323 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 PRR5P85299 388 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 MEDAGQ5VYS4 303 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 VN1R4Q7Z5H5 301 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 BCDIN3DQ7Z5W3 292 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 IQCF1Q8N6M8 205 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 OR9A2Q8NGT5 310 aa19.59■□□□□ 0.73
CCDC88B-203ENST00000359902 PRRC1Q96M27 445 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms