RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 OXR1Q8N573 874 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 GPR26Q8NDV2 337 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 SRFBP1Q8NEF9 429 aaKnown RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 BEST4Q8NFU0 473 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 OR7G3Q8NG95 312 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 OR2T4Q8NH00 348 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 SLC16A10Q8TF71 515 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 POF1BQ8WVV4 589 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 NXPE2Q96DL1 559 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 UBL7Q96S82 380 aaPredicted RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 BHLHE41Q9C0J9 482 aaPredicted RBP6.43□□□□□ -1.38
VPS39-202ENST00000348544 SAP130Q9H0E3 1048 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 ISYNA1Q9NPH2 558 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 NMRK2Q9NPI5 230 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 ZC4H2Q9NQZ6 224 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 ENAMQ9NRM1 1142 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 SEMA3GQ9NS98 782 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 SDHAF2Q9NX18 166 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 ATP6V1HQ9UI12 483 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 FBXW2Q9UKT8 454 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 NOD1Q9Y239 953 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 GPR52Q9Y2T5 361 aa6.43□□□□□ -1.38
VPS39-202ENST00000348544 PLXNB3Q9ULL4 1909 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 A0A1W2PRG6 482 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 SLC22A23A1A5C7 686 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 MTMR11A4FU01 709 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 FAAHO00519 579 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 PI15O43692 258 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 SH3BP5O60239 455 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 KLHL18O94889 574 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 TOXO94900 526 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 IFNA14P01570 189 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 KLKB1P03952 638 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 TCRBP04435 133 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 SULT1A3P0DMM9 295 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 SULT1A4P0DMN0 295 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 ACP2P11117 423 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 AHCYP23526 432 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 HNF1BP35680 557 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 SELENOPP49908 381 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 RPS26P62854 115 aaKnown RBP6.42□□□□□ -1.38
VPS39-202ENST00000348544 DUSP6Q16828 381 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 ATP13A5Q4VNC0 1218 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 EOGTQ5NDL2 527 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 LIPJQ5W064 366 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 FAM180BQ6P0A1 224 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 MZT2AQ6P582 158 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 TRIM40Q6P9F5 258 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 BHLHB9Q6PI77 547 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 DEF8Q6ZN54 512 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 RFLNAQ6ZTI6 216 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 FAM92BQ6ZTR7 304 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 KANSL1Q7Z3B3 1105 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 LUZP2Q86TE4 346 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 MEX3DQ86XN8 651 aaKnown RBP6.42□□□□□ -1.38
VPS39-202ENST00000348544 TTLQ8NG68 377 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 RAET1EQ8TD07 263 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 OR2M2Q96R28 347 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 ABHD1Q96SE0 405 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 SARGQ9BW04 601 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 PLA2G12AQ9BZM1 189 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 TM6SF2Q9BZW4 377 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 CYSLTR2Q9NS75 346 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 RYDENQ9NUL5 291 aaKnown RBP6.42□□□□□ -1.38
VPS39-202ENST00000348544 MRPS18AQ9NVS2 196 aaKnown RBP6.42□□□□□ -1.38
VPS39-202ENST00000348544 TAS2R7Q9NYW3 318 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 PPIEQ9UNP9 301 aaKnown RBP6.42□□□□□ -1.38
VPS39-202ENST00000348544 ANGPT4Q9Y264 503 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 MAB21L2Q9Y586 359 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 AGAP14A8MT82 685 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 GFYI3L273 518 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 CLDN11O75508 207 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 OAZ2O95190 189 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 FCER2P06734 321 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 H1F0P07305 194 aaKnown RBP6.42□□□□□ -1.38
VPS39-202ENST00000348544 C8GP07360 202 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 HIST1H2AGP0C0S8 130 aaPredicted RBP6.42□□□□□ -1.38
VPS39-202ENST00000348544 CELP19835 753 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 POU3F2P20265 443 aaPredicted RBP6.42□□□□□ -1.38
VPS39-202ENST00000348544 HIST1H2ADP20671 130 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 MMP11P24347 488 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 NUP62P37198 522 aaPredicted RBP6.42□□□□□ -1.38
VPS39-202ENST00000348544 NSG1P42857 185 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 GIPRP48546 466 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 CSNK1DP48730 415 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 TPMTP51580 245 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 CCR6P51684 374 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 ACLYP53396 1101 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 RAB14P61106 215 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 RHOAP61586 193 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 RAB40BQ12829 278 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 FZD5Q13467 585 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 GSG1Q2KHT4 349 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 NHLRC3Q5JS37 347 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 IDNKQ5T6J7 187 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 LRFN4Q6PJG9 635 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 LYPD4Q6UWN0 246 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 SERPINA13PQ6UXR4 307 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 KRT74Q7RTS7 529 aa6.42□□□□□ -1.38
VPS39-202ENST00000348544 ZER1Q7Z7L7 766 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms