RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 EDEM2Q9BV94 578 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 MCOLN1Q9GZU1 580 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 DUSP15Q9H1R2 295 aaPredicted RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 TUBB1Q9H4B7 451 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 KLHL31Q9H511 634 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 REEP4Q9H6H4 257 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 WDCPQ9H6R7 721 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 ELAC1Q9H777 363 aaKnown RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 GLRX2Q9NS18 164 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 ZFP57Q9NU63 452 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 NDOR1Q9UHB4 597 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 EIF2B4Q9UI10 523 aaKnown RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 WASF3Q9UPY6 502 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 PCDHB1Q9Y5F3 818 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 HELZP42694 1942 aaKnown RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 A0A1W2PQL4 384 aaPredicted RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 MEX3AA1L020 520 aaKnown RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 ISM1B1AKI9 464 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 DISC1C4P0D8 188 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 GPR31O00270 319 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 WNT9AO14904 365 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 ICOSLGO75144 302 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 SLC22A3O75751 556 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 MT-CO1P00395 513 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 EGFP01133 1207 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 PTHP01270 115 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 SLC10A3P09131 477 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 ODC1P11926 461 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 CR2P20023 1033 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 ITGA3P26006 1051 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 SLC19A1P41440 591 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 INPP1P49441 399 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 CRISP3P54108 245 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 CRADDP78560 199 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 MAT1AQ00266 395 aaKnown RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 GLO1Q04760 184 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 FABP9Q0Z7S8 132 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 MTAPQ13126 283 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 MADCAM1Q13477 382 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 FAHD1Q6P587 224 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 TMEM207Q6UWW9 146 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 CD300LGQ6UXG3 332 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 WASH2PQ6VEQ5 465 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 NPSR1Q6W5P4 371 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 USP30Q70CQ3 517 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 CHST9Q7L1S5 443 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 DDX53Q86TM3 631 aaKnown RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 DCUN1D3Q8IWE4 304 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 PRSS58Q8IYP2 241 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 SPAG16Q8N0X2 631 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 PUSL1Q8N0Z8 303 aaKnown RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 SVBPQ8N300 66 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 DTWD1Q8N5C7 304 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 FAM86B1Q8N7N1 296 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 ZNF548Q8NEK5 533 aaPredicted RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 BPIFCQ8NFQ6 507 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 OR4F6Q8NGB9 312 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 TCTEX1D2Q8WW35 142 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 OTUB1Q96FW1 271 aaPredicted RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 MSLNLQ96KJ4 702 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 PKP4Q99569 1192 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 TSNAXQ99598 290 aaKnown RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 ZNF559Q9BR84 538 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 YIPF4Q9BSR8 244 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 GGACTQ9BVM4 153 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 ULBP1Q9BZM6 244 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 SAP130Q9H0E3 1048 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 OR51J1Q9H342 316 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 UNKLQ9H9P5 680 aaKnown RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 MRPS30Q9NP92 439 aaKnown RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 EXOSC4Q9NPD3 245 aaKnown RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 ADARB2Q9NS39 739 aaKnown RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 UXTQ9UBK9 157 aaPredicted RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 SPASTQ9UBP0 616 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 PSORS1C1Q9UIG5 152 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 PCDHB8Q9UN66 801 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 PLEKHA6Q9Y2H5 1048 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 TRBV5-4A0A0C4DH59 114 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 URADA6NGE7 173 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 UGDHO60701 494 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 PRAMEF11O60813 436 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 AKR7A3O95154 331 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 SNAI1O95863 264 aaPredicted RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 CBSLP0DN79 551 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 FOLR2P14207 255 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 ANXA7P20073 488 aaKnown RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 APEX1P27695 318 aaKnown RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 NOS3P29474 1203 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 CBSP35520 551 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 CRATP43155 626 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 HSPA7P48741 367 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 NUTF2P61970 127 aaKnown RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 TSTQ16762 297 aaKnown RBP6.31□□□□□ -1.4
ZNF540-201ENST00000316433 DDI2Q5TDH0 399 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 OTOP2Q7RTS6 562 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 ZNF367Q7RTV3 350 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 TMEM17Q86X19 198 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 ZNF383Q8NA42 475 aa6.31□□□□□ -1.4
ZNF540-201ENST00000316433 NLGN2Q8NFZ4 835 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms