RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 PPLO60437 1756 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 ALDOBP05062 364 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 UBBP0CG47 229 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 UBCP0CG48 685 aaKnown RBP13.26□□□□□ -0.29
CSPG4-201ENST00000308508 RPS27AP62979 156 aaKnown RBP13.26□□□□□ -0.29
CSPG4-201ENST00000308508 UBA52P62987 128 aaKnown RBP13.26□□□□□ -0.29
CSPG4-201ENST00000308508 EIF2B1Q14232 305 aaKnown RBP13.26□□□□□ -0.29
CSPG4-201ENST00000308508 LRIT3Q3SXY7 679 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 SKA3Q8IX90 412 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 RCBTB1Q8NDN9 531 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 ABHD11Q8NFV4 315 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 TTC24A2A3L6 582 aaPredicted RBP13.26□□□□□ -0.29
CSPG4-201ENST00000308508 LCMT2O60294 686 aaKnown RBP13.26□□□□□ -0.29
CSPG4-201ENST00000308508 CLDN7O95471 211 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 CSTAP01040 98 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 OPRL1P41146 370 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 SP3Q02447 781 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 HYAL2Q12891 473 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 GALNT10Q86SR1 603 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 TMEM150AQ86TG1 271 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 ZNF695Q8IW36 515 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 SLC7A5P1Q8MH63 180 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 SCAMP5Q8TAC9 235 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 LSM5Q9Y4Y9 91 aaKnown RBP13.26□□□□□ -0.29
CSPG4-201ENST00000308508 DNMT3AQ9Y6K1 912 aaPredicted RBP13.26□□□□□ -0.29
CSPG4-201ENST00000308508 EDDM13A0A1B0GTR0 161 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 ARGFXA6NJG6 315 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 UPK3BL1B0FP48 263 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 UPK3BL2E5RIL1 263 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 PTNP21246 168 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 NKX3-2P78367 333 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 PTPRRQ15256 657 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 SGCAQ16586 387 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 NT5C3BQ969T7 300 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 SH3YL1Q96HL8 342 aaPredicted RBP13.26□□□□□ -0.29
CSPG4-201ENST00000308508 ZBTB20Q9HC78 741 aaPredicted RBP13.26□□□□□ -0.29
CSPG4-201ENST00000308508 SLAMF1Q13291 335 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 HAVCR2Q8TDQ0 301 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 MFFQ9GZY8 342 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 MYOCOSA0A1B0GUC4 107 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 POP7O75817 140 aaKnown RBP13.26□□□□□ -0.29
CSPG4-201ENST00000308508 SCGB1D1O95968 90 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 HNRNPKP61978 463 aaKnown RBP eCLIP13.26□□□□□ -0.29
CSPG4-201ENST00000308508 INAVAQ3KP66 663 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 TRIB2Q92519 343 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 A0A1W2PS29 197 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 ARVCFO00192 962 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 PEX12O00623 359 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 JRKO75564 520 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 NFATC2Q13469 925 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 CNIH2Q6PI25 160 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 OR5AK2Q8NH90 309 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 ZNF559Q9BR84 538 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 ASB3Q9Y575 518 aa13.26□□□□□ -0.29
CSPG4-201ENST00000308508 CFAP20Q9Y6A4 193 aaKnown RBP13.26□□□□□ -0.29
CSPG4-201ENST00000308508 SEC14L2O76054 403 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 VSX2P58304 361 aaPredicted RBP13.25□□□□□ -0.29
CSPG4-201ENST00000308508 RPS24P62847 133 aaKnown RBP13.25□□□□□ -0.29
CSPG4-201ENST00000308508 SLC10A6Q3KNW5 377 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 FAM205BPQ63HN1 556 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 SLC9B2Q86UD5 537 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 NUP43Q8NFH3 380 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 KIF25Q9UIL4 384 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 NAALAD2Q9Y3Q0 740 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 DIP2CQ9Y2E4 1556 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 MTX2O75431 263 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 RAB6AP20340 208 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 APOFQ13790 326 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 ZNF440Q8IYI8 595 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 C17orf62Q9BQA9 187 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 SLC6A5Q9Y345 797 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 RIPK3Q9Y572 518 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 CA5AP35218 305 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 SERINC3Q13530 473 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 CES4AQ5XG92 561 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 TPRG1Q6ZUI0 275 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 TREML1Q86YW5 311 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 KRTCAP2Q8N6L1 136 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 GPRC5BQ9NZH0 403 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 TMEM181Q9P2C4 612 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 SERTAD3Q9UJW9 196 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 ZNF223Q9UK11 482 aaPredicted RBP13.25□□□□□ -0.29
CSPG4-201ENST00000308508 GLOD5A6NK44 160 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 H3BMQ9 156 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 ACOT7O00154 380 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 KDELR2P33947 212 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 HMGN3Q15651 99 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 LCN8Q6JVE9 175 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 METTL4Q8N3J2 472 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 C12orf45Q8N5I9 185 aaPredicted RBP13.25□□□□□ -0.29
CSPG4-201ENST00000308508 COG8Q96MW5 612 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 GPATCH2Q9NW75 528 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 NFAT5O94916 1531 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 MEGF11A6BM72 1044 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 VNN1O95497 513 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 GABRA3P34903 492 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 SOWAHAQ2M3V2 549 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 NIPAL3Q6P499 406 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 OR4E2Q8NGC2 313 aa13.25□□□□□ -0.29
CSPG4-201ENST00000308508 FAM83CQ9BQN1 747 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms