RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PIK3R3Q92569 461 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 GIMAP5Q96F15 307 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 SLC35A4Q96G79 324 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 ZNF764Q96H86 408 aaPredicted RBP15.45■□□□□ 0.06
USP4-201ENST00000265560 TOR3AQ9H497 397 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 Q9H521 79 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 LYRM4Q9HD34 91 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 SEC14L3Q9UDX4 400 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 CLDN24A6NM45 220 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 PCDHGA12O60330 932 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 ATP6V1B1P15313 513 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 CHRNEQ04844 493 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 NNATQ16517 81 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 IFI44LQ53G44 452 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 MLIPQ5VWP3 458 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 PLXDC1Q8IUK5 500 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 LZICQ8WZA0 190 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 RLIMQ9NVW2 624 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 FBXO34Q9NWN3 711 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 P2RX2Q9UBL9 471 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 ZNF639Q9UID6 485 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 DMXL1Q9Y485 3027 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 LY6G6EA0A0G2JKS1 128 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 M0R3H8 397 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 HYAL3O43820 417 aaPredicted RBP15.44■□□□□ 0.06
USP4-201ENST00000265560 OR10H2O60403 315 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 MFN2O95140 757 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 FESP07332 822 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 POU2F1P14859 743 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 EPHA2P29317 976 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 RXRGP48443 463 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 CHN2P52757 468 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 CRB2Q5IJ48 1285 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 KRT80Q6KB66 452 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 SHISA6Q6ZSJ9 500 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 ARMC8Q8IUR7 673 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 MARVELD2Q8N4S9 558 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 ADAMTS15Q8TE58 950 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 A4GALTQ9NPC4 353 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 U3KQA8 63 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 CNOT1A5YKK6 2376 aaKnown RBP15.44■□□□□ 0.06
USP4-201ENST00000265560 NPIPA5A0A0B4J1W7 369 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 A0A1W2PQM1 296 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 NPIPA7E9PJI5 369 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 SEMA7AO75326 666 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 NPIPA8P0DM63 369 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 XCR1P46094 333 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 ALDH3A2P51648 485 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 PGDP52209 483 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 CCL7P80098 99 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 HSD11B2P80365 405 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 HOXC5Q00444 222 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 BLMHQ13867 455 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 CEBPEQ15744 281 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 CCDC157Q569K6 752 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 DEF8Q6ZN54 512 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 DHRSXQ8N5I4 330 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 OR51Q1Q8NH59 317 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 REEP1Q9H902 201 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 THUMPD1Q9NXG2 353 aaKnown RBP15.44■□□□□ 0.06
USP4-201ENST00000265560 CSNK1G3Q9Y6M4 447 aa15.44■□□□□ 0.06
USP4-201ENST00000265560 TNRC6BQ9UPQ9 1833 aaKnown RBP15.44■□□□□ 0.06
USP4-201ENST00000265560 DPPA5A6NC42 116 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 MAGEA13PA6NCF6 341 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 TMEM247A6NEH6 219 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 A8MUA0 341 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 PDX1P52945 283 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 SPIBQ01892 262 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 STX4Q12846 297 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 DUSP5Q16690 384 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 MANEAQ5SRI9 462 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 OR56A1Q8NGH5 318 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 OR5K1Q8NHB7 308 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 OSBPL10Q9BXB5 764 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 ZIC2O95409 532 aaPredicted RBP15.43■□□□□ 0.06
USP4-201ENST00000265560 PTNP21246 168 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 SSTR4P31391 388 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 KHKP50053 298 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 RAB38P57729 211 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 MINDY4Q4G0A6 757 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 KANSL1Q7Z3B3 1105 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 C16orf62Q7Z3J2 963 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 MUS81Q96NY9 551 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 IER2Q9BTL4 223 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 NLGN3Q9NZ94 848 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 AHCTF1Q8WYP5 2266 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 CENPVL1A0A0U1RR11 272 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 ALBP02768 609 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 RPLP0P05388 317 aaKnown RBP15.43■□□□□ 0.06
USP4-201ENST00000265560 THRBP10828 461 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 DAPP51397 102 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 CDH15P55291 814 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 CARM1Q86X55 608 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 VRK2Q86Y07 508 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 NR1H4Q96RI1 486 aaPredicted RBP15.43■□□□□ 0.06
USP4-201ENST00000265560 ALOXE3Q9BYJ1 711 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 CUTCQ9NTM9 273 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 EPHA6Q9UF33 1036 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 SUSD2Q9UGT4 822 aa15.43■□□□□ 0.06
USP4-201ENST00000265560 SCOCQ9UIL1 159 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms