RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 DUSP2Q05923 314 aa16.8■□□□□ 0.28
CLN3-239ENST00000628023 LTB4RQ15722 352 aa16.8■□□□□ 0.28
CLN3-239ENST00000628023 H3F3CQ6NXT2 135 aa16.8■□□□□ 0.28
CLN3-239ENST00000628023 SLC29A4Q7RTT9 530 aa16.8■□□□□ 0.28
CLN3-239ENST00000628023 LRRC34Q8IZ02 419 aa16.8■□□□□ 0.28
CLN3-239ENST00000628023 LGI4Q8N135 537 aa16.8■□□□□ 0.28
CLN3-239ENST00000628023 BEST3Q8N1M1 668 aa16.8■□□□□ 0.28
CLN3-239ENST00000628023 ADCY4Q8NFM4 1077 aa16.8■□□□□ 0.28
CLN3-239ENST00000628023 OR5L2Q8NGL0 311 aa16.8■□□□□ 0.28
CLN3-239ENST00000628023 OR9A2Q8NGT5 310 aa16.8■□□□□ 0.28
CLN3-239ENST00000628023 PNPLA2Q96AD5 504 aa16.8■□□□□ 0.28
CLN3-239ENST00000628023 GAL3ST4Q96RP7 486 aa16.8■□□□□ 0.28
CLN3-239ENST00000628023 ASIC5Q9NY37 505 aa16.8■□□□□ 0.28
CLN3-239ENST00000628023 EXO1Q9UQ84 846 aaKnown RBP16.8■□□□□ 0.28
CLN3-239ENST00000628023 PRRC2CQ9Y520 2896 aaKnown RBP16.8■□□□□ 0.28
CLN3-239ENST00000628023 ESPL1Q14674 2120 aa16.79■□□□□ 0.28
CLN3-239ENST00000628023 SPTAN1Q13813 2472 aaKnown RBP16.79■□□□□ 0.28
CLN3-239ENST00000628023 GABRR3A8MPY1 467 aa16.79■□□□□ 0.28
CLN3-239ENST00000628023 IGKV3-11P04433 115 aa16.79■□□□□ 0.28
CLN3-239ENST00000628023 CT62P0C5K7 136 aa16.79■□□□□ 0.28
CLN3-239ENST00000628023 PRPS1L1P21108 318 aa16.79■□□□□ 0.28
CLN3-239ENST00000628023 SSTR4P31391 388 aa16.79■□□□□ 0.28
CLN3-239ENST00000628023 UQCRFS1P47985 274 aa16.79■□□□□ 0.28
CLN3-239ENST00000628023 RNF4P78317 190 aa16.79■□□□□ 0.28
CLN3-239ENST00000628023 PRICKLE4Q2TBC4 344 aa16.79■□□□□ 0.28
CLN3-239ENST00000628023 SLC9B1Q4ZJI4 515 aa16.79■□□□□ 0.28
CLN3-239ENST00000628023 IGFL2Q6UWQ7 119 aa16.79■□□□□ 0.28
CLN3-239ENST00000628023 IGFL3Q6UXB1 125 aa16.79■□□□□ 0.28
CLN3-239ENST00000628023 RGS9BPQ6ZS82 235 aa16.79■□□□□ 0.28
CLN3-239ENST00000628023 ACAD11Q709F0 780 aa16.79■□□□□ 0.28
CLN3-239ENST00000628023 LARP4Q71RC2 724 aaKnown RBP eCLIP16.79■□□□□ 0.28
CLN3-239ENST00000628023 MAVSQ7Z434 540 aa16.79■□□□□ 0.28
CLN3-239ENST00000628023 MTERF3Q96E29 417 aa16.79■□□□□ 0.28
CLN3-239ENST00000628023 ZNF764Q96H86 408 aaPredicted RBP16.79■□□□□ 0.28
CLN3-239ENST00000628023 PRPF18Q99633 342 aaKnown RBP16.79■□□□□ 0.28
CLN3-239ENST00000628023 NPAS2Q99743 824 aa16.79■□□□□ 0.28
CLN3-239ENST00000628023 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.79■□□□□ 0.28
CLN3-239ENST00000628023 LIN28AQ9H9Z2 209 aaKnown RBP16.79■□□□□ 0.28
CLN3-239ENST00000628023 TAS2R7Q9NYW3 318 aa16.79■□□□□ 0.28
CLN3-239ENST00000628023 PLA2G3Q9NZ20 509 aa16.79■□□□□ 0.28
CLN3-239ENST00000628023 MAT2BQ9NZL9 334 aa16.79■□□□□ 0.28
CLN3-239ENST00000628023 BCAP29Q9UHQ4 241 aa16.79■□□□□ 0.28
CLN3-239ENST00000628023 OR6C76A6NM76 312 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 MYO1GB0I1T2 1018 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 PRKNO60260 465 aaPredicted RBP16.78■□□□□ 0.28
CLN3-239ENST00000628023 MAN1A2O60476 641 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 WDPCPO95876 746 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 PCSK2P16519 638 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 ST13P50502 369 aaKnown RBP16.78■□□□□ 0.28
CLN3-239ENST00000628023 DIO3P55073 304 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 MLF1P58340 268 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 MRPS35P82673 323 aaKnown RBP16.78■□□□□ 0.28
CLN3-239ENST00000628023 OC90Q02509 493 aaPredicted RBP16.78■□□□□ 0.28
CLN3-239ENST00000628023 PDE7AQ13946 482 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 HLA-DQA1Q5Y7H0 255 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 SLC6A19Q695T7 634 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 OGFOD2Q6N063 350 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 FAM111BQ6SJ93 734 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 SPATA19Q7Z5L4 167 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 C9orf40Q8IXQ3 194 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 KRTCAP2Q8N6L1 136 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 RBMXL3Q8N7X1 1067 aaKnown RBP16.78■□□□□ 0.28
CLN3-239ENST00000628023 OR7G1Q8NGA0 311 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 OR8K3Q8NH51 312 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 ZFP28Q8NHY6 868 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 SUN3Q8TAQ9 357 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 KAT2AQ92830 837 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 CIDECQ96AQ7 238 aaPredicted RBP16.78■□□□□ 0.28
CLN3-239ENST00000628023 ZBED6CLQ96FA7 236 aaPredicted RBP16.78■□□□□ 0.28
CLN3-239ENST00000628023 UTP23Q9BRU9 249 aaKnown RBP16.78■□□□□ 0.28
CLN3-239ENST00000628023 DPY30Q9C005 99 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 OR10A5Q9H207 317 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 ATAD3AQ9NVI7 634 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 ANKRD10Q9NXR5 420 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 MAPRE3Q9UPY8 281 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 CNTRLQ7Z7A1 2325 aa16.78■□□□□ 0.28
CLN3-239ENST00000628023 OR5H15A6NDH6 313 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 WWP2O00308 870 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 POLR3GO15318 223 aaPredicted RBP16.77■□□□□ 0.28
CLN3-239ENST00000628023 TBX19O60806 448 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 PRAMEF2O60811 474 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 ITGA10O75578 1167 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 TGDSO95455 350 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 GPC1P35052 558 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 SLC37A1P57057 533 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 GUCY1A3Q02108 690 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 FUT7Q11130 342 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 MAP4K2Q12851 820 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 HSPB3Q12988 150 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 EXOSC7Q15024 291 aaKnown RBP16.77■□□□□ 0.28
CLN3-239ENST00000628023 RPS6KA2Q15349 733 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 CEBPEQ15744 281 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 PRSS53Q2L4Q9 553 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 C4orf17Q53FE4 359 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 ZNF385BQ569K4 471 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 ZNF628Q5EBL2 1059 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 CPTPQ5TA50 214 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 TMEM156Q8N614 296 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 OR7A2PQ8NGA2 310 aa16.77■□□□□ 0.28
CLN3-239ENST00000628023 OR52R1Q8NGF1 315 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms