RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 NTSP30990 170 aa15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 HPCAL1P37235 193 aa15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 ST13P50502 369 aaKnown RBP15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 NCBP2P52298 156 aaKnown RBP eCLIP15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 TRMT12Q53H54 448 aaKnown RBP15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 COLEC12Q5KU26 742 aa15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 C16orf47Q6ZP98 133 aaPredicted RBP15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 RIMKLAQ8IXN7 391 aa15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 FAM9CQ8IZT9 166 aa15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 KRTCAP2Q8N6L1 136 aa15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 SIMC1Q8NDZ2 872 aa15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 CATSPER1Q8NEC5 780 aa15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 OR7G1Q8NGA0 311 aa15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 OR5L2Q8NGL0 311 aa15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 NUBPLQ8TB37 319 aa15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 ACTRT2Q8TDY3 377 aa15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 PNPLA2Q96AD5 504 aa15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 AMDHD1Q96NU7 426 aa15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 OR10A5Q9H207 317 aa15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 GLIPR2Q9H4G4 154 aa15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 ANAPC2Q9UJX6 822 aa15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 B3GNT3Q9Y2A9 372 aa15.35■□□□□ 0.05
CCDC28A-202ENST00000611852 OR5H15A6NDH6 313 aa15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 FCHO1O14526 889 aa15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 PDPK1O15530 556 aa15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 OR2J2O76002 312 aa15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 CBX7O95931 251 aa15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 ALDOCP09972 364 aaKnown RBP15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 PCSK2P16519 638 aa15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 RPL3P39023 403 aaKnown RBP15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 CD96P40200 585 aa15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 FRKP42685 505 aaPredicted RBP15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 TNFSF10P50591 281 aa15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 CLDN8P56748 225 aa15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 C21orf58P58505 322 aa15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 TUBA3CQ13748 450 aa15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 EXOSC7Q15024 291 aaKnown RBP15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 EBPQ15125 230 aaKnown RBP15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 PLEKHN1Q494U1 663 aaPredicted RBP15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 ZNF468Q5VIY5 522 aaPredicted RBP15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 TUBA3EQ6PEY2 450 aa15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 EPGNQ6UW88 154 aa15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 SLC29A4Q7RTT9 530 aa15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 OR7A2PQ8NGA2 310 aa15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 NUDT8Q8WV74 236 aa15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 KAT2AQ92830 837 aa15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 CIDECQ96AQ7 238 aaPredicted RBP15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 ERP27Q96DN0 273 aa15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 UTP23Q9BRU9 249 aaKnown RBP15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 ANKRD10Q9NXR5 420 aa15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 YARS2Q9Y2Z4 477 aaKnown RBP15.34■□□□□ 0.05
CCDC28A-202ENST00000611852 TCP11X1B4DZS4 312 aa15.33■□□□□ 0.05
CCDC28A-202ENST00000611852 B8ZZF3 427 aa15.33■□□□□ 0.05
CCDC28A-202ENST00000611852 WWP2O00308 870 aa15.33■□□□□ 0.05
CCDC28A-202ENST00000611852 CDK2AP1O14519 115 aa15.33■□□□□ 0.05
CCDC28A-202ENST00000611852 ANKRD28O15084 1053 aa15.33■□□□□ 0.05
CCDC28A-202ENST00000611852 EDF1O60869 148 aaKnown RBP15.33■□□□□ 0.05
CCDC28A-202ENST00000611852 DIAPH2O60879 1101 aa15.33■□□□□ 0.05
CCDC28A-202ENST00000611852 TGDSO95455 350 aa15.33■□□□□ 0.05
CCDC28A-202ENST00000611852 TRHRP34981 398 aaPredicted RBP15.33■□□□□ 0.05
CCDC28A-202ENST00000611852 DUSP8Q13202 625 aa15.33■□□□□ 0.05
CCDC28A-202ENST00000611852 TLR1Q15399 786 aa15.33■□□□□ 0.05
CCDC28A-202ENST00000611852 SPATA19Q7Z5L4 167 aa15.33■□□□□ 0.05
CCDC28A-202ENST00000611852 Q8NA96 180 aa15.33■□□□□ 0.05
CCDC28A-202ENST00000611852 C16orf52Q8NHV5 167 aa15.33■□□□□ 0.05
CCDC28A-202ENST00000611852 OR52B2Q96RD2 323 aa15.33■□□□□ 0.05
CCDC28A-202ENST00000611852 WWTR1Q9GZV5 400 aa15.33■□□□□ 0.05
CCDC28A-202ENST00000611852 ANKRA2Q9H9E1 313 aa15.33■□□□□ 0.05
CCDC28A-202ENST00000611852 SUV39H1O43463 412 aa15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 PLOD3O60568 738 aa15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 SORBS2O94875 1100 aaKnown RBP15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 SLITRK5O94991 958 aa15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 LAMP1P11279 417 aa15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 DDX5P17844 614 aaKnown RBP15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 GUCY1A3Q02108 690 aa15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 LSM12Q3MHD2 195 aaKnown RBP15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 CPTPQ5TA50 214 aa15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 FHL5Q5TD97 284 aa15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 NXNQ6DKJ4 435 aa15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 ZNF551Q7Z340 670 aaPredicted RBP15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 OR7G2Q8NG99 324 aa15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 OR52R1Q8NGF1 315 aa15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 CEP70Q8NHQ1 597 aa15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 COQ8BQ96D53 544 aa15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 ZBED6CLQ96FA7 236 aaPredicted RBP15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 SIGLEC12Q96PQ1 595 aa15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 GAL3ST4Q96RP7 486 aa15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 RASL10BQ96S79 203 aa15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 PRPF18Q99633 342 aaKnown RBP15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 TRIM45Q9H8W5 580 aaPredicted RBP15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 ACSS1Q9NUB1 689 aaPredicted RBP15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 AIG1Q9NVV5 245 aa15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 LUZP4Q9P127 313 aa15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 BCAP29Q9UHQ4 241 aa15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 MAPRE3Q9UPY8 281 aa15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 DTX4Q9Y2E6 619 aa15.33■□□□□ 0.04
CCDC28A-202ENST00000611852 C2orf92A0A1B0GVN3 265 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 PLOD2O00469 737 aa15.32■□□□□ 0.04
CCDC28A-202ENST00000611852 ZNF354AO60765 605 aaPredicted RBP15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms