RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 AKTIPQ9H8T0 292 aa18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 ANKRA2Q9H9E1 313 aa18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 MEAF6Q9HAF1 191 aa18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 MAP10Q9P2G4 905 aa18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 COPS7AQ9UBW8 275 aa18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 YARS2Q9Y2Z4 477 aaKnown RBP18.06■□□□□ 0.48
SHKBP1-221ENST00000599833 RP1L1Q8IWN7 2480 aaPredicted RBP18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 UQCRHLA0A096LP55 91 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 OR6C76A6NM76 312 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 SDHDO14521 159 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 OR6B1O95007 311 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 UQCRHP07919 91 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 PTGR1Q14914 329 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 SMU1Q2TAY7 513 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 ATP6AP1LQ52LC2 224 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 PIGGQ5H8A4 983 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 ZNF324BQ6AW86 544 aaPredicted RBP18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 RNF111Q6ZNA4 994 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 RIMKLAQ8IXN7 391 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 VWA5B2Q8N398 1253 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 LIX1Q8N485 282 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 OR9A2Q8NGT5 310 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 C16orf52Q8NHV5 167 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 CDC26Q8NHZ8 85 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 GFM2Q969S9 779 aaKnown RBP18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 PPP1R36Q96LQ0 422 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 UTP23Q9BRU9 249 aaKnown RBP18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 NUF2Q9BZD4 464 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 GLIPR2Q9H4G4 154 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 REEP4Q9H6H4 257 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 LRFN1Q9P244 771 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 ZNF780BQ9Y6R6 833 aa18.05■□□□□ 0.48
SHKBP1-221ENST00000599833 TTLL8A6PVC2 850 aa18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 FCHO1O14526 889 aa18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 LRATO95237 230 aa18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 SOX3P41225 446 aa18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 EMDP50402 254 aa18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 C21orf58P58505 322 aa18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 PPP2R2AP63151 447 aa18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 EMX2Q04743 252 aa18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 EXOSC7Q15024 291 aaKnown RBP18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 IGFBP7Q16270 282 aa18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 IL23RQ5VWK5 629 aa18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 ATG16L1Q676U5 607 aa18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 MDGA2Q7Z553 956 aa18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 CISD2Q8N5K1 135 aaKnown RBP18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 OR7G2Q8NG99 324 aa18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 OR7G1Q8NGA0 311 aa18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 OR5L2Q8NGL0 311 aa18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 CPT1CQ8TCG5 803 aa18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 TUBGCP3Q96CW5 907 aa18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 AMDHD1Q96NU7 426 aa18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 SH2D2AQ9NP31 389 aa18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 ASF1BQ9NVP2 202 aa18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 ATP6V1HQ9UI12 483 aa18.04■□□□□ 0.48
SHKBP1-221ENST00000599833 ANKRD28O15084 1053 aa18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 AKAP10O43572 662 aa18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 DYRK3O43781 588 aa18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 WISP2O76076 250 aa18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 PSMG1O95456 288 aa18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 G6PDP11413 515 aa18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 GPX3P22352 226 aa18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 SSR4P51571 173 aa18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 ZNF791Q3KP31 576 aaPredicted RBP18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 ZNF766Q5HY98 468 aa18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 WDR75Q8IWA0 830 aaKnown RBP18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 TRIM42Q8IWZ5 723 aa18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 LRRC34Q8IZ02 419 aa18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 SAMD14Q8IZD0 417 aaPredicted RBP18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 KIRREL3Q8IZU9 778 aa18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 FNDC5Q8NAU1 212 aa18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 KAT2AQ92830 837 aa18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 CIDECQ96AQ7 238 aaPredicted RBP18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 MAELQ96JY0 434 aaKnown RBP18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 BRINP2Q9C0B6 783 aa18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 SLCO1B3Q9NPD5 702 aa18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 ABI3Q9P2A4 366 aa18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 MARCOQ9UEW3 520 aaPredicted RBP18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 SVILO95425 2214 aa18.03■□□□□ 0.48
SHKBP1-221ENST00000599833 NUP214P35658 2090 aaPredicted RBP18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 ASPDHA6ND91 283 aa18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 PLOD2O00469 737 aa18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 SCAMP2O15127 329 aaKnown RBP18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 NME2P1O60361 137 aa18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 PLOD3O60568 738 aa18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 NME6O75414 186 aaPredicted RBP18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 SP1P08047 785 aa18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 ALDOCP09972 364 aaKnown RBP18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 PRPS2P11908 318 aa18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 NME2P22392 152 aa18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 ASMTP46597 345 aa18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 CYB561P49447 251 aa18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 DIO3P55073 304 aa18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 INAQ16352 499 aa18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 OGFOD2Q6N063 350 aa18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 KRTCAP2Q8N6L1 136 aa18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 C17orf47Q8NEP4 570 aa18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 OR52R1Q8NGF1 315 aa18.02■□□□□ 0.48
SHKBP1-221ENST00000599833 ITPAQ9BY32 194 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms