RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 ACER3Q9NUN7 267 aa16.03■□□□□ 0.16
SHKBP1-216ENST00000598201 RLIMQ9NVW2 624 aa16.03■□□□□ 0.16
SHKBP1-216ENST00000598201 PHF11Q9UIL8 331 aa16.03■□□□□ 0.16
SHKBP1-216ENST00000598201 PSME2Q9UL46 239 aa16.03■□□□□ 0.16
SHKBP1-216ENST00000598201 SLC22A7Q9Y694 548 aa16.03■□□□□ 0.16
SHKBP1-216ENST00000598201 CCDC88CQ9P219 2028 aa16.02■□□□□ 0.16
SHKBP1-216ENST00000598201 TTC36A6NLP5 189 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 H3BSA7 217 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 EMC8O43402 210 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 BCKDHBP21953 392 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 HLCSP50747 726 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 GANABQ14697 944 aaKnown RBP16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 C6orf141Q5SZD1 244 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 ARMC6Q6NXE6 501 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 HMGN2P46Q86SG4 172 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 COMTD1Q86VU5 262 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 SLC5A8Q8N695 610 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 CSNK1A1LQ8N752 337 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 TTC29Q8NA56 475 aaPredicted RBP16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 ZBTB44Q8NCP5 570 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 OR5T3Q8NGG3 340 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 OR56A1Q8NGH5 318 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 C1orf216Q8TAB5 229 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 ADAMTS16Q8TE57 1224 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 GIPC3Q8TF64 312 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 FEVQ99581 238 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 PRRX2Q99811 253 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 ADNPQ9H2P0 1102 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 IL21RQ9HBE5 538 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 EQTNQ9NQ60 294 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 RHCGQ9UBD6 479 aa16.02■□□□□ 0.15
SHKBP1-216ENST00000598201 FFAR1O14842 300 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 PCDH17O14917 1159 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 ZSCAN9O15535 394 aaPredicted RBP16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 SEMA7AO75326 666 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 IFNW1P05000 195 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 CHRM4P08173 479 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 CRHBPP24387 322 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 KCNJ5P48544 419 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 XKP51811 444 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 FOXD4Q12950 439 aaPredicted RBP16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 BHLHB9Q6PI77 547 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 NUP43Q8NFH3 380 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 OR4D11Q8NGI4 311 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 MIPOL1Q8TD10 442 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 HDAC2Q92769 488 aaKnown RBP16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 COL26A1Q96A83 441 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 TSC22D3Q99576 134 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 SEMA6CQ9H3T2 930 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 AASSQ9UDR5 926 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 GPC6Q9Y625 555 aaPredicted RBP16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 CEPT1Q9Y6K0 416 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 EML5Q05BV3 1969 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 TMEM247A6NEH6 219 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 HRO43593 1189 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 UGT2B11O75310 529 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 PDE9AO76083 593 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 UBXN7O94888 489 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 RYKP34925 604 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 LIMS1P48059 325 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 PRR5P85299 388 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 ID2Q02363 134 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 KCNC4Q03721 635 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 SRSF5Q13243 272 aaKnown RBP16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 IL18R1Q13478 541 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 FAM111BQ6SJ93 734 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 SLC36A4Q6YBV0 504 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 WDR53Q7Z5U6 358 aaPredicted RBP16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 IQCHQ86VS3 1027 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 RBM45Q8IUH3 476 aaKnown RBP16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 LRRC25Q8N386 305 aaPredicted RBP16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 TMEM52Q8NDY8 209 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 SIMC1Q8NDZ2 872 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 OR7G2Q8NG99 324 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 OR10G2Q8NGC3 310 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 OR4K14Q8NGD5 310 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 CNIH3Q8TBE1 160 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 FBLIM1Q8WUP2 373 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 GAB3Q8WWW8 586 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 MOAP1Q96BY2 351 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 GIMAP5Q96F15 307 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 ZNF607Q96SK3 696 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 PCED1AQ9H1Q7 454 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 NAALAD2Q9Y3Q0 740 aa16.01■□□□□ 0.15
SHKBP1-216ENST00000598201 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16■□□□□ 0.15
SHKBP1-216ENST00000598201 E9PQ18 207 aa16■□□□□ 0.15
SHKBP1-216ENST00000598201 RHCEP18577 417 aa16■□□□□ 0.15
SHKBP1-216ENST00000598201 GSTT1P30711 240 aa16■□□□□ 0.15
SHKBP1-216ENST00000598201 CNR2P34972 360 aa16■□□□□ 0.15
SHKBP1-216ENST00000598201 SOX18P35713 384 aa16■□□□□ 0.15
SHKBP1-216ENST00000598201 FASLGP48023 281 aa16■□□□□ 0.15
SHKBP1-216ENST00000598201 MAN2A2P49641 1150 aa16■□□□□ 0.15
SHKBP1-216ENST00000598201 MICAQ29983 383 aa16■□□□□ 0.15
SHKBP1-216ENST00000598201 C6orf132Q5T0Z8 1188 aa16■□□□□ 0.15
SHKBP1-216ENST00000598201 GKN2Q86XP6 184 aa16■□□□□ 0.15
SHKBP1-216ENST00000598201 LACC1Q8IV20 430 aa16■□□□□ 0.15
SHKBP1-216ENST00000598201 LGI4Q8N135 537 aa16■□□□□ 0.15
SHKBP1-216ENST00000598201 AVL9Q8NBF6 648 aa16■□□□□ 0.15
SHKBP1-216ENST00000598201 PROX1Q92786 737 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms