RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 DOK4Q8TEW6 326 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 CAVIN3Q969G5 261 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 CERS2Q96G23 380 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 PIGQQ9BRB3 760 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 SLC39A3Q9BRY0 314 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 NAT9Q9BTE0 207 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 G6PC3Q9BUM1 346 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 METTL7AQ9H8H3 244 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 ACTR8Q9H981 624 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 PPANQ9NQ55 473 aaKnown RBP9.2□□□□□ -0.94
TRIM28-210ENST00000597618 ELOVL5Q9NYP7 299 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 WWOXQ9NZC7 414 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 SLC17A6Q9P2U8 582 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 CTNNAL1Q9UBT7 734 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 PHF11Q9UIL8 331 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 GUCA1BQ9UMX6 200 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 DSCAMO60469 2012 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 FREM3P0C091 2139 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 ABCA1O95477 2261 aa9.2□□□□□ -0.94
TRIM28-210ENST00000597618 NCF1BA6NI72 391 aaPredicted RBP9.19□□□□□ -0.94
TRIM28-210ENST00000597618 NCF1CA8MVU1 366 aaPredicted RBP9.19□□□□□ -0.94
TRIM28-210ENST00000597618 RNF223E7ERA6 249 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 C16orf97H3BN30 126 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 PHF1O43189 567 aaPredicted RBP9.19□□□□□ -0.94
TRIM28-210ENST00000597618 PRAMEF4O60810 478 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 GPR75O95800 540 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 NCF1P14598 390 aaPredicted RBP9.19□□□□□ -0.94
TRIM28-210ENST00000597618 POU2F1P14859 743 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 CD22P20273 847 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 LOXP28300 417 aaPredicted RBP9.19□□□□□ -0.94
TRIM28-210ENST00000597618 SERPINB1P30740 379 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 GALNSP34059 522 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 BUD31P41223 144 aaPredicted RBP9.19□□□□□ -0.94
TRIM28-210ENST00000597618 RPS13P62277 151 aaKnown RBP9.19□□□□□ -0.94
TRIM28-210ENST00000597618 SLAMF1Q13291 335 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 VEZF1Q14119 521 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 TGFBIQ15582 683 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 TBCCQ15814 346 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 ETFDHQ16134 617 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 PDK4Q16654 411 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 CLEC12BQ2HXU8 276 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 TEDDM1Q5T9Z0 273 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 PRAMEF9Q5VWM5 478 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 OR4C11Q6IEV9 310 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 SLC30A6Q6NXT4 461 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 TTC27Q6P3X3 843 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 TMEM81Q6P7N7 255 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 AAGABQ6PD74 315 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 PLXDC2Q6UX71 529 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 P4HA3Q7Z4N8 544 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 GPR180Q86V85 440 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 IFNEQ86WN2 208 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 PPIL6Q8IXY8 311 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 CNEP1R1Q8N9A8 125 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 SNX31Q8N9S9 440 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 C17orf47Q8NEP4 570 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 ZNF473Q8WTR7 871 aaKnown RBP9.19□□□□□ -0.94
TRIM28-210ENST00000597618 UBE2E3Q969T4 207 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 CTHRC1Q96CG8 243 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 STARD4Q96DR4 205 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 DTNBP1Q96EV8 351 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 TMEM79Q9BSE2 394 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 OSBPL11Q9BXB4 747 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 OR2B2Q9GZK3 357 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 PTBP2Q9UKA9 531 aaKnown RBP9.19□□□□□ -0.94
TRIM28-210ENST00000597618 RNF112Q9ULX5 631 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 MAPRE3Q9UPY8 281 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 DLGAP4Q9Y2H0 992 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 WIF1Q9Y5W5 379 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 RAI1Q7Z5J4 1906 aaPredicted RBP9.19□□□□□ -0.94
TRIM28-210ENST00000597618 MED12Q93074 2177 aa9.19□□□□□ -0.94
TRIM28-210ENST00000597618 HAX1O00165 279 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 SAP18O00422 153 aaKnown RBP9.18□□□□□ -0.94
TRIM28-210ENST00000597618 PLOD2O00469 737 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 HCRTR2O43614 444 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 CD5LO43866 347 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 CBR3O75828 277 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 SLC35E2BP0CK96 405 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 SLC35E2P0CK97 266 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 ABCD3P28288 659 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 SSTR4P31391 388 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 GGT5P36269 586 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 CASP2P42575 452 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 KCNJ5P48544 419 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 LHX2P50458 406 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 ZNF75DP51815 510 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 RAP1GDS1P52306 607 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 NR1H2P55055 460 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 GFRA1P56159 465 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 IRF8Q02556 426 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 FUT7Q11130 342 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 SNTA1Q13424 505 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 CHRFAM7AQ494W8 412 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 BEX5Q5H9J7 111 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 KHDRBS2Q5VWX1 349 aaKnown RBP9.18□□□□□ -0.94
TRIM28-210ENST00000597618 C18orf63Q68DL7 685 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 VWA1Q6PCB0 445 aa9.18□□□□□ -0.94
TRIM28-210ENST00000597618 ZNF474Q6S9Z5 364 aaPredicted RBP9.18□□□□□ -0.94
TRIM28-210ENST00000597618 ZNF704Q6ZNC4 412 aaPredicted RBP9.18□□□□□ -0.94
TRIM28-210ENST00000597618 ZNF550Q7Z398 422 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms