RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 PRAMEF13Q5VWM6 474 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 GHDCQ8N2G8 530 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 TRAM1L1Q8N609 369 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 KLK6Q92876 244 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 TBX5Q99593 518 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 ZCCHC3Q9NUD5 404 aaKnown RBP14.47□□□□□ -0.09
UPF1-204ENST00000596842 CNIH4Q9P003 139 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 KLHL42Q9P2K6 505 aa14.47□□□□□ -0.09
UPF1-204ENST00000596842 SEMA7AO75326 666 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 EPHX1P07099 455 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 MYL9P24844 172 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 CXCR2P25025 360 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 RPS25P62851 125 aaKnown RBP14.46□□□□□ -0.09
UPF1-204ENST00000596842 DEFB103AP81534 67 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 LARS2Q15031 903 aaKnown RBP14.46□□□□□ -0.09
UPF1-204ENST00000596842 HENMT1Q5T8I9 393 aaKnown RBP14.46□□□□□ -0.09
UPF1-204ENST00000596842 FAM71E1Q6IPT2 247 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 ACSM5Q6NUN0 579 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 PLET1Q6UQ28 207 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 NXPE4Q6UWF7 544 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 ST8SIA2Q92186 375 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 C11orf24Q96F05 449 aaPredicted RBP14.46□□□□□ -0.09
UPF1-204ENST00000596842 RAD9AQ99638 391 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 OR2B2Q9GZK3 357 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 THSD1Q9NS62 852 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 TXNL4BQ9NX01 149 aaKnown RBP14.46□□□□□ -0.09
UPF1-204ENST00000596842 SEC14L4Q9UDX3 406 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 SNX7Q9UNH6 387 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 ARID1BQ8NFD5 2236 aaPredicted RBP14.46□□□□□ -0.09
UPF1-204ENST00000596842 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.46□□□□□ -0.09
UPF1-204ENST00000596842 OR7A10O76100 309 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 NR2F6P10588 404 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 SLC16A1P53985 500 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 ZNF750Q32MQ0 723 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 PODNL1Q6PEZ8 512 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 OR4K5Q8NGD3 323 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 FCRL1Q96LA6 429 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 SLC13A4Q9UKG4 626 aa14.46□□□□□ -0.09
UPF1-204ENST00000596842 OR1F1O43749 312 aa14.46□□□□□ -0.1
UPF1-204ENST00000596842 RPL35P42766 123 aaKnown RBP14.46□□□□□ -0.1
UPF1-204ENST00000596842 LASP1Q14847 261 aaKnown RBP14.46□□□□□ -0.1
UPF1-204ENST00000596842 QPRTQ15274 297 aa14.46□□□□□ -0.1
UPF1-204ENST00000596842 LIPIQ6XZB0 460 aa14.46□□□□□ -0.1
UPF1-204ENST00000596842 LSM14AQ8ND56 463 aaKnown RBP14.46□□□□□ -0.1
UPF1-204ENST00000596842 CCDC32Q9BV29 185 aa14.46□□□□□ -0.1
UPF1-204ENST00000596842 TEX10Q9NXF1 929 aaPredicted RBP14.46□□□□□ -0.1
UPF1-204ENST00000596842 NLKQ9UBE8 527 aa14.46□□□□□ -0.1
UPF1-204ENST00000596842 IL36AQ9UHA7 158 aa14.46□□□□□ -0.1
UPF1-204ENST00000596842 C2orf92A0A1B0GVN3 265 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 SLC5A10A0PJK1 596 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 SH3D21A4FU49 640 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 HEPACAM2A8MVW5 462 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 ZNF30P17039 623 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 UQCRC2P22695 453 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 OPRD1P41143 372 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 CRYBB2P43320 205 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 MAN2A2P49641 1150 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 RAB8AP61006 207 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 LHX8Q68G74 356 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 PDZD3Q86UT5 571 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 TCEAL8Q8IYN2 117 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 GRPEL2Q8TAA5 225 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 TP53INP1Q96A56 240 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 TIFAQ96CG3 184 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 DEFB118Q96PH6 123 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 NXF2Q9GZY0 626 aaKnown RBP14.45□□□□□ -0.1
UPF1-204ENST00000596842 SLC22A4Q9H015 551 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 TM7SF3Q9NS93 570 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 V9GYH0 126 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 NPC1O15118 1278 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 LATS1O95835 1130 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 FCER2P06734 321 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 PNLIPRP1P54315 467 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 PSPHP78330 225 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 DDI2Q5TDH0 399 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 C17orf64Q86WR6 236 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 TIGD4Q8IY51 512 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 OR8J1Q8NGP2 316 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 OR52P1PQ8NH57 321 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 KAT2AQ92830 837 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 IRF7Q92985 503 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 ARSGQ96EG1 525 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 C17orf62Q9BQA9 187 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 CPEB1Q9BZB8 566 aaKnown RBP14.45□□□□□ -0.1
UPF1-204ENST00000596842 CNOT2Q9NZN8 540 aaKnown RBP14.45□□□□□ -0.1
UPF1-204ENST00000596842 SPATA2Q9UM82 520 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 PLPP1O14494 284 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 CDK2AP1O14519 115 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 CELP19835 753 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 SOX18P35713 384 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 CD79BP40259 229 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 ST8SIA6P61647 398 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.45□□□□□ -0.1
UPF1-204ENST00000596842 IGSF11Q5DX21 431 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 AMER3Q8N944 861 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 ST6GAL2Q96JF0 529 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 TREX2Q9BQ50 279 aaPredicted RBP14.45□□□□□ -0.1
UPF1-204ENST00000596842 SAV1Q9H4B6 383 aaPredicted RBP14.45□□□□□ -0.1
UPF1-204ENST00000596842 XKR8Q9H6D3 395 aa14.45□□□□□ -0.1
UPF1-204ENST00000596842 TMEM38AQ9H6F2 299 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms