RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 E2F3O00716 465 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 STX11O75558 287 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 OR6B1O95007 311 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 GCAP28676 217 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 CAPZBP47756 277 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 RAB15P59190 212 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 ST3GAL3Q11203 375 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 FZD2Q14332 565 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 TBC1D25Q3MII6 688 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 PTCHD4Q6ZW05 846 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 DRAXINQ8NBI3 349 aaPredicted RBP9.32□□□□□ -0.92
LIG3-216ENST00000593099 OR8J3Q8NGG0 315 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 RBM4BQ9BQ04 359 aaKnown RBP9.32□□□□□ -0.92
LIG3-216ENST00000593099 RBM4Q9BWF3 364 aaKnown RBP9.32□□□□□ -0.92
LIG3-216ENST00000593099 THSD1Q9NS62 852 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 POMPQ9Y244 141 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 C2orf92A0A1B0GVN3 265 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 GFYI3L273 518 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 PPP6CO00743 305 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 CDK4P11802 303 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 CTSKP43235 329 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 RAB38P57729 211 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 TOP3AQ13472 1001 aaPredicted RBP9.32□□□□□ -0.92
LIG3-216ENST00000593099 SNAPC1Q16533 368 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 SPATS1Q496A3 300 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 AKIRIN2Q53H80 203 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 YOD1Q5VVQ6 348 aaPredicted RBP9.32□□□□□ -0.92
LIG3-216ENST00000593099 BLOC1S3Q6QNY0 202 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 WASH2PQ6VEQ5 465 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 CDRT4Q8N9R6 151 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 L3MBTL4Q8NA19 623 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 NR4A3Q92570 626 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 CENPNQ96H22 339 aaPredicted RBP9.32□□□□□ -0.92
LIG3-216ENST00000593099 CADM1Q9BY67 442 aaKnown RBP9.32□□□□□ -0.92
LIG3-216ENST00000593099 WASH6PQ9NQA3 447 aa9.32□□□□□ -0.92
LIG3-216ENST00000593099 CCDC163A0A0D9SF12 145 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 CREG1O75629 220 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 PRKD3O94806 890 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 H1F0P07305 194 aaKnown RBP9.31□□□□□ -0.92
LIG3-216ENST00000593099 NPPBP16860 134 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 IGFBP5P24593 272 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 EPHA8P29322 1005 aaPredicted RBP9.31□□□□□ -0.92
LIG3-216ENST00000593099 SLC5A2P31639 672 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 NR0B1P51843 470 aaKnown RBP9.31□□□□□ -0.92
LIG3-216ENST00000593099 GPR19Q15760 415 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 KHDC1Q4VXA5 237 aaKnown RBP9.31□□□□□ -0.92
LIG3-216ENST00000593099 GATSQ8NAP1 163 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 HOXD1Q9GZZ0 328 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 PCDHAC1Q9H158 963 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 DUSP15Q9H1R2 295 aaPredicted RBP9.31□□□□□ -0.92
LIG3-216ENST00000593099 SOX17Q9H6I2 414 aaPredicted RBP9.31□□□□□ -0.92
LIG3-216ENST00000593099 MARCH7Q9H992 704 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 S100A14Q9HCY8 104 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 GPC6Q9Y625 555 aaPredicted RBP9.31□□□□□ -0.92
LIG3-216ENST00000593099 ATG2BQ96BY7 2078 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 A0A1W2PQF6 199 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 ARPC2O15144 300 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 ZFAND5O76080 213 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 SDC1P18827 310 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 PSMB9P28065 219 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 VBP1P61758 197 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 OGFOD2Q6N063 350 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 NANOGP8Q6NSW7 305 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 METTL4Q8N3J2 472 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 ZNF740Q8NDX6 193 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 OR4C6Q8NH72 309 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 ACTRT3Q9BYD9 372 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 NANOGQ9H9S0 305 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 DNAJB9Q9UBS3 223 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 EBF1Q9UH73 591 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 BAIAP2Q9UQB8 552 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 FAM227AF5H4B4 570 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 RFPL3O75679 317 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 TRIM23P36406 574 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 ARG2P78540 354 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 BPHLQ86WA6 291 aaPredicted RBP9.31□□□□□ -0.92
LIG3-216ENST00000593099 KMT5CQ86Y97 462 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 ESX1Q8N693 406 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 BMFQ96LC9 184 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 MCHR1Q99705 422 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 ERVK-19Q9WJR5 959 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 RBMX2Q9Y388 322 aaKnown RBP9.31□□□□□ -0.92
LIG3-216ENST00000593099 A0A1B0GX78 115 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 ZNF749O43361 778 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 LDB3O75112 727 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 SNX4O95219 450 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 SYNGR4O95473 234 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 NR2C1P13056 603 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 EPHA4P54764 986 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 TMEM71Q6P5X7 295 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 FIGNL1Q6PIW4 674 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 KLHL24Q6TFL4 600 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 WDR5BQ86VZ2 330 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 CLECL1Q8IZS7 167 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 LINC00471Q8N535 108 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 RCBTB1Q8NDN9 531 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 ASB9Q96DX5 294 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 FER1L6-AS2Q96M78 137 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 MS4A4EQ96PG1 132 aa9.31□□□□□ -0.92
LIG3-216ENST00000593099 ZNF184Q99676 751 aaPredicted RBP9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms