RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 FIGLAQ6QHK4 219 aa9.56□□□□□ -0.88
SS18-210ENST00000578700 CYP2R1Q6VVX0 501 aa9.56□□□□□ -0.88
SS18-210ENST00000578700 MED25Q71SY5 747 aa9.56□□□□□ -0.88
SS18-210ENST00000578700 ABHD13Q7L211 337 aa9.56□□□□□ -0.88
SS18-210ENST00000578700 TICAM1Q8IUC6 712 aa9.56□□□□□ -0.88
SS18-210ENST00000578700 OR4A15Q8NGL6 344 aa9.56□□□□□ -0.88
SS18-210ENST00000578700 CREB3L4Q8TEY5 395 aa9.56□□□□□ -0.88
SS18-210ENST00000578700 GAL3ST3Q96A11 431 aa9.56□□□□□ -0.88
SS18-210ENST00000578700 C17orf62Q9BQA9 187 aa9.56□□□□□ -0.88
SS18-210ENST00000578700 PAIP1Q9H074 479 aaKnown RBP9.56□□□□□ -0.88
SS18-210ENST00000578700 RAB33BQ9H082 229 aa9.56□□□□□ -0.88
SS18-210ENST00000578700 VCXQ9H320 206 aa9.56□□□□□ -0.88
SS18-210ENST00000578700 YY1AP1Q9H869 796 aa9.56□□□□□ -0.88
SS18-210ENST00000578700 DDX31Q9H8H2 851 aaKnown RBP9.56□□□□□ -0.88
SS18-210ENST00000578700 GIMAP4Q9NUV9 329 aa9.56□□□□□ -0.88
SS18-210ENST00000578700 LYARQ9NX58 379 aaKnown RBP9.56□□□□□ -0.88
SS18-210ENST00000578700 VAPAQ9P0L0 249 aa9.56□□□□□ -0.88
SS18-210ENST00000578700 EGFL7Q9UHF1 273 aa9.56□□□□□ -0.88
SS18-210ENST00000578700 TCFL5Q9UL49 500 aa9.56□□□□□ -0.88
SS18-210ENST00000578700 AP4S1Q9Y587 144 aa9.56□□□□□ -0.88
SS18-210ENST00000578700 PCDHB14Q9Y5E9 798 aa9.56□□□□□ -0.88
SS18-210ENST00000578700 ZFHX3Q15911 3703 aa9.56□□□□□ -0.88
SS18-210ENST00000578700 CSMD2Q7Z408 3487 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 A0A1W2PRB8 838 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 DHRS12A0PJE2 317 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 ELOVL7A1L3X0 281 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 OR2A25A4D2G3 310 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 CLIC1O00299 241 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 TXNDC9O14530 226 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 PDPK1O15530 556 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 ZSCAN9O15535 394 aaPredicted RBP9.55□□□□□ -0.88
SS18-210ENST00000578700 TBX19O60806 448 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 CEACAM4O75871 244 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 SCELO95171 688 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 KRT75O95678 551 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 GSNP06396 782 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 C8BP07358 591 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 FAM58BPP0C7Q3 252 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 PIM1P11309 404 aaPredicted RBP9.55□□□□□ -0.88
SS18-210ENST00000578700 FCGR1AP12314 374 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 CDH3P22223 829 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 HIST1H1TP22492 207 aaPredicted RBP9.55□□□□□ -0.88
SS18-210ENST00000578700 SLC7A1P30825 629 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 SKP1P63208 163 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 ATP1A4Q13733 1029 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 ADPRMQ3LIE5 342 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 SPDYE7PQ495Y7 208 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 ZC3H12BQ5HYM0 836 aaKnown RBP9.55□□□□□ -0.88
SS18-210ENST00000578700 GLYATQ6IB77 296 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 ANKRD26P1Q6NSI1 321 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 TRIM73Q86UV7 250 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 SPPL2CQ8IUH8 684 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 FAM20CQ8IXL6 584 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 ZCCHC7Q8N3Z6 543 aaKnown RBP9.55□□□□□ -0.88
SS18-210ENST00000578700 D2HGDHQ8N465 521 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 TMEM102Q8N9M5 508 aaPredicted RBP9.55□□□□□ -0.88
SS18-210ENST00000578700 OR10A6Q8NH74 314 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 ZFP28Q8NHY6 868 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.55□□□□□ -0.88
SS18-210ENST00000578700 NT5CQ8TCD5 201 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 ADAMTS17Q8TE56 1095 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 NUDT8Q8WV74 236 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 NCLNQ969V3 563 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 FAM162AQ96A26 154 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 MARVELD3Q96A59 401 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 PPWD1Q96BP3 646 aaKnown RBP9.55□□□□□ -0.88
SS18-210ENST00000578700 ZNF501Q96CX3 271 aaPredicted RBP9.55□□□□□ -0.88
SS18-210ENST00000578700 MS4A6EQ96DS6 147 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 ZNF764Q96H86 408 aaPredicted RBP9.55□□□□□ -0.88
SS18-210ENST00000578700 SMAD5Q99717 465 aaKnown RBP9.55□□□□□ -0.88
SS18-210ENST00000578700 ZFYVE21Q9BQ24 234 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 TACO1Q9BSH4 297 aaKnown RBP9.55□□□□□ -0.88
SS18-210ENST00000578700 INPP5KQ9BT40 448 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 SPATA9Q9BWV2 254 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 PIF1Q9H611 641 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 SERHLQ9NQF3 203 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 PSME2Q9UL46 239 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 AURKCQ9UQB9 309 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 KLHL20Q9Y2M5 609 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 KLK4Q9Y5K2 254 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 SPACA6W5XKT8 324 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 ANKRD12Q6UB98 2062 aa9.55□□□□□ -0.88
SS18-210ENST00000578700 TRBV5-3A0A0A0MS03 114 aa9.54□□□□□ -0.88
SS18-210ENST00000578700 A0A0J9YVX5 310 aa9.54□□□□□ -0.88
SS18-210ENST00000578700 TCRBV3S1A0A5B6 114 aa9.54□□□□□ -0.88
SS18-210ENST00000578700 TLCD2A6NGC4 264 aa9.54□□□□□ -0.88
SS18-210ENST00000578700 FAM220BPB1ANY3 271 aa9.54□□□□□ -0.88
SS18-210ENST00000578700 RTCAO00442 366 aaKnown RBP9.54□□□□□ -0.88
SS18-210ENST00000578700 HNRNPRO43390 633 aaKnown RBP9.54□□□□□ -0.88
SS18-210ENST00000578700 ZBTB11O95625 1053 aaPredicted RBP9.54□□□□□ -0.88
SS18-210ENST00000578700 ABCB1P08183 1280 aaPredicted RBP9.54□□□□□ -0.88
SS18-210ENST00000578700 RAB40ALP0C0E4 278 aa9.54□□□□□ -0.88
SS18-210ENST00000578700 NTSP30990 170 aa9.54□□□□□ -0.88
SS18-210ENST00000578700 TLX1P31314 330 aaPredicted RBP9.54□□□□□ -0.88
SS18-210ENST00000578700 SOAT1P35610 550 aa9.54□□□□□ -0.88
SS18-210ENST00000578700 CHI3L1P36222 383 aaPredicted RBP9.54□□□□□ -0.88
SS18-210ENST00000578700 RRADP55042 308 aa9.54□□□□□ -0.88
SS18-210ENST00000578700 PHC1P78364 1004 aa9.54□□□□□ -0.88
SS18-210ENST00000578700 SLAMF1Q13291 335 aa9.54□□□□□ -0.88
SS18-210ENST00000578700 TRIP10Q15642 601 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms