RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 ATP6V0BQ99437 205 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 RPP25Q9BUL9 199 aaKnown RBP4.15□□□□□ -1.75
NUP88-213ENST00000576862 THUMPD3Q9BV44 507 aaKnown RBP4.15□□□□□ -1.75
NUP88-213ENST00000576862 ACAT2Q9BWD1 397 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 OCR1Q9BZK8 76 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 C1orf21Q9H246 121 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 ADNPQ9H2P0 1102 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 JPT2Q9H910 190 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 MRPL17Q9NRX2 175 aaKnown RBP4.15□□□□□ -1.75
NUP88-213ENST00000576862 SLCO1C1Q9NYB5 712 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 DDX19BQ9UMR2 479 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 GPR132Q9UNW8 380 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 AP1M2Q9Y6Q5 423 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 ALS2Q96Q42 1657 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 PFASO15067 1338 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 ABCC6O95255 1503 aa4.15□□□□□ -1.75
NUP88-213ENST00000576862 LRRC37A3O60309 1634 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 PHRF1Q9P1Y6 1649 aaKnown RBP4.14□□□□□ -1.75
NUP88-213ENST00000576862 OVOS2A0A0G2JMS6 1433 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 LMO7Q8WWI1 1683 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 CLRN2A0PK11 232 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 SRRM4A7MD48 611 aaKnown RBP4.14□□□□□ -1.75
NUP88-213ENST00000576862 KBTBD13C9JR72 458 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 POLR3GO15318 223 aaPredicted RBP4.14□□□□□ -1.75
NUP88-213ENST00000576862 INPP4BO15327 924 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 STX6O43752 255 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 PRPSAP2O60256 369 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 GALR3O60755 368 aaPredicted RBP4.14□□□□□ -1.75
NUP88-213ENST00000576862 PRDM1O75626 825 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 SLITRK3O94933 977 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 HEXBP07686 556 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 ADORA3P0DMS8 318 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 ARF4P18085 180 aaPredicted RBP4.14□□□□□ -1.75
NUP88-213ENST00000576862 ZFP36L2P47974 494 aaKnown RBP4.14□□□□□ -1.75
NUP88-213ENST00000576862 SULT1E1P49888 294 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 BACE1P56817 501 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 SRPXP78539 464 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 HTD2P86397 168 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 GCKRQ14397 625 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 SYCP1Q15431 976 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 PPP1R7Q15435 360 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 TEX35Q5T0J7 233 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 PLPP4Q5VZY2 271 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 PM20D1Q6GTS8 502 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 PODNL1Q6PEZ8 512 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 Q71RC1 249 aaPredicted RBP4.14□□□□□ -1.75
NUP88-213ENST00000576862 LINC00612Q8N6U2 182 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 TMEM99Q8N816 258 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 NHLRC2Q8NBF2 726 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 C17orf50Q8WW18 174 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 PTP4A1Q93096 173 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 TOMM40LQ969M1 308 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 SLC35C1Q96A29 364 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 CABS1Q96KC9 395 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 TAAR6Q96RI8 345 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 PARK7Q99497 189 aaKnown RBP4.14□□□□□ -1.75
NUP88-213ENST00000576862 LIN28AQ9H9Z2 209 aaKnown RBP4.14□□□□□ -1.75
NUP88-213ENST00000576862 SLC7A10Q9NS82 523 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 QPCTLQ9NXS2 382 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 DNAJB9Q9UBS3 223 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 CLIP2Q9UDT6 1046 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 HOOK1Q9UJC3 728 aaKnown RBP4.14□□□□□ -1.75
NUP88-213ENST00000576862 TSPAN16Q9UKR8 245 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 PLEKHG2Q9H7P9 1386 aa4.14□□□□□ -1.75
NUP88-213ENST00000576862 CAMTA1Q9Y6Y1 1673 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 TCP10L2B9ZVM9 353 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 P2RX6O15547 441 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 HOXB7P09629 217 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 CCND3P30281 292 aaPredicted RBP4.13□□□□□ -1.75
NUP88-213ENST00000576862 FCGR2BP31994 310 aaPredicted RBP4.13□□□□□ -1.75
NUP88-213ENST00000576862 FCGR2CP31995 323 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 SOAT1P35610 550 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 SLC1A3P43003 542 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 IER3P46695 156 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 CRYBA2P53672 197 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 STARD6P59095 220 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 MECOMQ03112 1051 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 TEFQ10587 303 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 GPR50Q13585 617 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 PTK6Q13882 451 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 TRADDQ15628 312 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 KBTBD12Q3ZCT8 623 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 SLC25A30Q5SVS4 291 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 CCDC183Q5T5S1 534 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 CASC4Q6P4E1 433 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 NHLRC1Q6VVB1 395 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 TOM1L2Q6ZVM7 507 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 LPCAT2Q7L5N7 544 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 SLC43A2Q8N370 569 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 C10orf53Q8N6V4 93 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.13□□□□□ -1.75
NUP88-213ENST00000576862 SMYD1Q8NB12 490 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 ZBTB44Q8NCP5 570 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 ATP6V0A1Q93050 837 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 BPIFA2Q96DR5 249 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 C1orf147Q96MC9 270 aaPredicted RBP4.13□□□□□ -1.75
NUP88-213ENST00000576862 RUNDC3BQ96NL0 473 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 TMEM237Q96Q45 408 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 SPXQ9BT56 116 aa4.13□□□□□ -1.75
NUP88-213ENST00000576862 UTP14AQ9BVJ6 771 aaKnown RBP4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms