RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 FAM47EQ6ZV65 393 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 FJX1Q86VR8 437 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 SULF2Q8IWU5 870 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 DND1Q8IYX4 353 aaKnown RBP7.5□□□□□ -1.21
VPS53-214ENST00000572607 TAGAPQ8N103 731 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 EID3Q8N140 333 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 SLC15A4Q8N697 577 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 ZNF321PQ8N8H1 164 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 GOLM1Q8NBJ4 401 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 PSD4Q8NDX1 1056 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 OR2W6PQ8NHA6 318 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 AGAP11Q8TF27 550 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 EDARADDQ8WWZ3 215 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 CAVIN3Q969G5 261 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 KLHL29Q96CT2 875 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 APOPT1Q96IL0 206 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 SMC6Q96SB8 1091 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 ACPTQ9BZG2 426 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 ROPN1BQ9BZX4 212 aaPredicted RBP7.5□□□□□ -1.21
VPS53-214ENST00000572607 BRINP2Q9C0B6 783 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 TSPAN10Q9H1Z9 355 aaPredicted RBP7.5□□□□□ -1.21
VPS53-214ENST00000572607 ROPN1Q9HAT0 212 aaPredicted RBP7.5□□□□□ -1.21
VPS53-214ENST00000572607 RRAGDQ9NQL2 400 aaPredicted RBP7.5□□□□□ -1.21
VPS53-214ENST00000572607 SACM1LQ9NTJ5 587 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.5□□□□□ -1.21
VPS53-214ENST00000572607 SH3BGRL2Q9UJC5 107 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 ZNF225Q9UK10 706 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 EMCNQ9ULC0 261 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 ENTPD4Q9Y227 616 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 CFL2Q9Y281 166 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 PCDHA9Q9Y5H5 950 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 V9GYY5 206 aaPredicted RBP7.5□□□□□ -1.21
VPS53-214ENST00000572607 DOCK10Q96BY6 2186 aa7.5□□□□□ -1.21
VPS53-214ENST00000572607 CROCCQ5TZA2 2017 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 C2orf92A0A1B0GVN3 265 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 TMEM200CA6NKL6 621 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 FOXO6A8MYZ6 492 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 CCL21O00585 134 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 TP53I11O14683 189 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 ASNA1O43681 348 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 CDC40O60508 579 aaKnown RBP eCLIP7.49□□□□□ -1.21
VPS53-214ENST00000572607 SLC19A2O60779 497 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 CLDN1O95832 211 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 LDLRP01130 860 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 IGKV3-11P04433 115 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 TUBBP07437 444 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 SERPINB3P29508 390 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 TIA1P31483 386 aaKnown RBP eCLIP7.49□□□□□ -1.21
VPS53-214ENST00000572607 TMED10P49755 219 aaKnown RBP7.49□□□□□ -1.21
VPS53-214ENST00000572607 HTR6P50406 440 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 NRG3P56975 720 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 RPP38P78345 283 aaKnown RBP7.49□□□□□ -1.21
VPS53-214ENST00000572607 HMGCS1Q01581 520 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 SLC18A2Q05940 514 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 BTKQ06187 659 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 GALNT1Q10472 559 aaPredicted RBP7.49□□□□□ -1.21
VPS53-214ENST00000572607 EBPQ15125 230 aaKnown RBP7.49□□□□□ -1.21
VPS53-214ENST00000572607 ZNF750Q32MQ0 723 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 PIGGQ5H8A4 983 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 RGS9BPQ6ZS82 235 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 FRMD7Q6ZUT3 714 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 SH2D5Q6ZV89 423 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 MDGA2Q7Z553 956 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 ZNF227Q86WZ6 799 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 TICAM1Q8IUC6 712 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 C9orf40Q8IXQ3 194 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 SRRM1Q8IYB3 904 aaKnown RBP7.49□□□□□ -1.21
VPS53-214ENST00000572607 SAMD14Q8IZD0 417 aaPredicted RBP7.49□□□□□ -1.21
VPS53-214ENST00000572607 OR7G1Q8NGA0 311 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 CDC26Q8NHZ8 85 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 DOK4Q8TEW6 326 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 AENQ8WTP8 325 aaKnown RBP7.49□□□□□ -1.21
VPS53-214ENST00000572607 CHTF18Q8WVB6 975 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 TM4SF18Q96CE8 201 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 SPACA9Q96E40 222 aaPredicted RBP7.49□□□□□ -1.21
VPS53-214ENST00000572607 KCNA7Q96RP8 456 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 FAM173AQ9BQD7 235 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 TRMOQ9BU70 441 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 SHCBP1LQ9BZQ2 653 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 WWTR1Q9GZV5 400 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 EML4Q9HC35 981 aaKnown RBP7.49□□□□□ -1.21
VPS53-214ENST00000572607 OXSMQ9NWU1 459 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 MKS1Q9NXB0 559 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 SENP1Q9P0U3 644 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 UTS2RQ9UKP6 389 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 TIMM22Q9Y584 194 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 CPAMD8Q8IZJ3 1885 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 ZFHX3Q15911 3703 aa7.49□□□□□ -1.21
VPS53-214ENST00000572607 C2CD3Q4AC94 2353 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 SERTM1A2A2V5 107 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 WIPF3A6NGB9 483 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 ENO4A6NNW6 628 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 WASHC1A8K0Z3 465 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 HRKO00198 91 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 PRRG2O14669 202 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 RGS14O43566 566 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 HS6ST1O60243 411 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 TRIM13O60858 407 aa7.48□□□□□ -1.21
VPS53-214ENST00000572607 BCAS2O75934 225 aaPredicted RBP7.48□□□□□ -1.21
VPS53-214ENST00000572607 RSL1D1O76021 490 aaKnown RBP7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms