RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 FBXL8Q96CD0 374 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 REPS1Q96D71 796 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 POPDC3Q9HBV1 291 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 SLC22A14Q9Y267 594 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 WIF1Q9Y5W5 379 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 IKBKGQ9Y6K9 419 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 USF3Q68DE3 2245 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 HS3ST1O14792 307 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 RAD51CO43502 376 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 OR10H2O60403 315 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 CDH16O75309 829 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 HAUS5O94927 633 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 CRHP06850 196 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 GNAZP19086 355 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 CPN2P22792 545 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 GSTM2P28161 218 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 STT3AP46977 705 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 FBXW4P57775 412 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 PCDH1Q08174 1060 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 PDIA2Q13087 525 aaKnown RBP10.06□□□□□ -0.8
VPS53-207ENST00000570510 PDAP1Q13442 181 aaKnown RBP10.06□□□□□ -0.8
VPS53-207ENST00000570510 MSS51Q4VC12 460 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 LIPNQ5VXI9 398 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 BICRALQ6AI39 1079 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 FAM45BPQ6NSW5 357 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 PAQR3Q6TCH7 311 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 PLXDC2Q6UX71 529 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 LYPD8Q6UX82 237 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 OR4N5Q8IXE1 308 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 ZNF611Q8N823 705 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 CEP112Q8N8E3 955 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 FAM45AQ8TCE6 357 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 PPWD1Q96BP3 646 aaKnown RBP10.06□□□□□ -0.8
VPS53-207ENST00000570510 VPS39Q96JC1 886 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 C16orf45Q96MC5 204 aaPredicted RBP10.06□□□□□ -0.8
VPS53-207ENST00000570510 HS6ST2Q96MM7 605 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 NDNQ99608 321 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 ANGPTL4Q9BY76 406 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 ROGDIQ9GZN7 287 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 WWTR1Q9GZV5 400 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 OPN3Q9H1Y3 402 aaPredicted RBP10.06□□□□□ -0.8
VPS53-207ENST00000570510 UBQLN3Q9H347 655 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 METTL7AQ9H8H3 244 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 VWA7Q9Y334 891 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 SNX24Q9Y343 169 aa10.06□□□□□ -0.8
VPS53-207ENST00000570510 ABCA1O95477 2261 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 NINQ8N4C6 2090 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.05□□□□□ -0.8
VPS53-207ENST00000570510 CLEC3AO75596 197 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 TNFSF13O75888 250 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 URI1O94763 535 aaPredicted RBP10.05□□□□□ -0.8
VPS53-207ENST00000570510 AHSGP02765 367 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 ENO2P09104 434 aaPredicted RBP10.05□□□□□ -0.8
VPS53-207ENST00000570510 C1GALT1C1LP0DN25 315 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 SOX18P35713 384 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 ACVR1BP36896 505 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 KCNC1P48547 511 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 PCYT1AP49585 367 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 HERVK_113P63132 956 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 ERVK-8P63133 956 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 SIRPAP78324 504 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 BIKQ13323 160 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 SLBPQ14493 270 aaKnown RBP eCLIP10.05□□□□□ -0.8
VPS53-207ENST00000570510 ZNF267Q14586 743 aaPredicted RBP10.05□□□□□ -0.8
VPS53-207ENST00000570510 CDKL4Q5MAI5 379 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 TIGD3Q6B0B8 471 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 ALKBH2Q6NS38 261 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 C8orf74Q6P047 294 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 AAGABQ6PD74 315 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 ANGPTL8Q6UXH0 198 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 TMEM64Q6YI46 380 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 SH2D5Q6ZV89 423 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 MILR1Q7Z6M3 343 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 IFNEQ86WN2 208 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 TRIM42Q8IWZ5 723 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 EIF1ADQ8N9N8 165 aaKnown RBP10.05□□□□□ -0.8
VPS53-207ENST00000570510 FBXO36Q8NEA4 188 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 SRFBP1Q8NEF9 429 aaKnown RBP10.05□□□□□ -0.8
VPS53-207ENST00000570510 RDH11Q8TC12 318 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 SPPL2AQ8TCT8 520 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 CAVIN3Q969G5 261 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 STARD4Q96DR4 205 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 DTNBP1Q96EV8 351 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 FBXL20Q96IG2 436 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 ZNF845Q96IR2 970 aaPredicted RBP10.05□□□□□ -0.8
VPS53-207ENST00000570510 KCNC2Q96PR1 638 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 EGFL8Q99944 293 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 RHNO1Q9BSD3 238 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 ERVK-6Q9BXR3 956 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 AICDAQ9GZX7 198 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 LYRM4Q9HD34 91 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 SNX15Q9NRS6 342 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 IARS2Q9NSE4 1012 aaKnown RBP10.05□□□□□ -0.8
VPS53-207ENST00000570510 GRHL1Q9NZI5 618 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 PTBP2Q9UKA9 531 aaKnown RBP10.05□□□□□ -0.8
VPS53-207ENST00000570510 ERVK-19Q9WJR5 959 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 NCKAP5O14513 1909 aa10.05□□□□□ -0.8
VPS53-207ENST00000570510 DOCK7Q96N67 2140 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 C2orf92A0A1B0GVN3 265 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms