RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 REEP3Q6NUK4 255 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 TMPRSS11AQ6ZMR5 421 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 KRT77Q7Z794 578 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 SIX5Q8N196 739 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 LILRA3Q8N6C8 439 aaPredicted RBP12.55□□□□□ -0.4
VPS4A-204ENST00000566354 FBXO15Q8NCQ5 510 aaPredicted RBP12.55□□□□□ -0.4
VPS4A-204ENST00000566354 ARRDC3Q96B67 414 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 TMEM80Q96HE8 168 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 IL4I1Q96RQ9 567 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 UCK2Q9BZX2 261 aa12.55□□□□□ -0.4
VPS4A-204ENST00000566354 SLC35F4A4IF30 521 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 SHISA7A6NL88 538 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 RECKO95980 971 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 TGFB1P01137 390 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 C1GALT1C1LP0DN25 315 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 SOAT1P35610 550 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 TNFRSF4P43489 277 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 RUNX1T1Q06455 604 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 DOC2BQ14184 412 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 SLBPQ14493 270 aaKnown RBP eCLIP12.54□□□□□ -0.4
VPS4A-204ENST00000566354 PUM1Q14671 1186 aaKnown RBP eCLIP12.54□□□□□ -0.4
VPS4A-204ENST00000566354 TMEM196Q5HYL7 178 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 TMEM201Q5SNT2 666 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 ATAD3CQ5T2N8 411 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 ARMC4Q5T2S8 1044 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 SLC34A3Q8N130 599 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 WDR48Q8TAF3 677 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 ZNF480Q8WV37 535 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 WDFY2Q96P53 400 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 SPOCK3Q9BQ16 436 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 MND1Q9BWT6 205 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 OR51B5Q9H339 312 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 REV1Q9UBZ9 1251 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 RPL36Q9Y3U8 105 aaKnown RBP12.54□□□□□ -0.4
VPS4A-204ENST00000566354 DYRK1BQ9Y463 629 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 ZNF670-ZNF695F2Z2N8 137 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 SAP18O00422 153 aaKnown RBP12.54□□□□□ -0.4
VPS4A-204ENST00000566354 FFAR1O14842 300 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 TSPAN9O75954 239 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 UQCRC2P22695 453 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 TBPL1P62380 186 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 TMEM115Q12893 351 aaPredicted RBP12.54□□□□□ -0.4
VPS4A-204ENST00000566354 RNLSQ5VYX0 342 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 ZNF517Q6ZMY9 492 aaPredicted RBP12.54□□□□□ -0.4
VPS4A-204ENST00000566354 IKBIPQ70UQ0 350 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 RAB43Q86YS6 212 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 TMIEQ8NEW7 156 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 HCAR2Q8TDS4 363 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 APOBEC4Q8WW27 367 aaKnown RBP12.54□□□□□ -0.4
VPS4A-204ENST00000566354 GLYATL1Q969I3 302 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 TP53INP1Q96A56 240 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 PDXPQ96GD0 296 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 NLNQ9BYT8 704 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 BARHL1Q9BZE3 327 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 MUTYHQ9UIF7 546 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 STUB1Q9UNE7 303 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 ICKQ9UPZ9 632 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 MGAT4BQ9UQ53 548 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 V9GYH0 126 aa12.54□□□□□ -0.4
VPS4A-204ENST00000566354 PIPSLA2A3N6 862 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 H3BM21 787 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 CSO75390 466 aaKnown RBP12.53□□□□□ -0.4
VPS4A-204ENST00000566354 KLHL18O94889 574 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 C1orf105O95561 183 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 KLK1P06870 262 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 XPAP23025 273 aaPredicted RBP12.53□□□□□ -0.4
VPS4A-204ENST00000566354 ITGB7P26010 798 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 PDHA2P29803 388 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 SOX3P41225 446 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 CRYBB2P43320 205 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 LIM2P55344 173 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 NXNL2Q5VZ03 156 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 KIAA1211LQ6NV74 962 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 CASP12Q6UXS9 341 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 IL17RCQ8NAC3 791 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 GPR151Q8TDV0 419 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 RASSF5Q8WWW0 418 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 ASB15Q8WXK1 588 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 TMEM121BQ9BXQ6 578 aaPredicted RBP12.53□□□□□ -0.4
VPS4A-204ENST00000566354 C8orf33Q9H7E9 229 aaPredicted RBP12.53□□□□□ -0.4
VPS4A-204ENST00000566354 C11orf16Q9NQ32 467 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 NDUFB11Q9NX14 153 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 LRRK1Q38SD2 2015 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 PLXNA2O75051 1894 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 TRBV4-1A0A0J9YWV2 114 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 HYKKA2RU49 373 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 C5orf58C9J3I9 102 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 SPINT1O43278 529 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 S100A6P06703 90 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 CKMT1AP12532 417 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 DDOSTP39656 456 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 CEP78Q5JTW2 689 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 CCNJQ5T5M9 372 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 TMEM220Q6QAJ8 160 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 NANOGP1Q8N7R0 232 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 PROKR2Q8NFJ6 384 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 OR8J1Q8NGP2 316 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 OR9Q1Q8NGQ5 310 aa12.53□□□□□ -0.4
VPS4A-204ENST00000566354 VANGL1Q8TAA9 524 aaPredicted RBP12.53□□□□□ -0.4
VPS4A-204ENST00000566354 SGPP1Q9BX95 441 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms