RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 OR7G1Q8NGA0 311 aa19.09■□□□□ 0.65
CLN3-219ENST00000565778 OR5M9Q8NGP3 310 aa19.09■□□□□ 0.65
CLN3-219ENST00000565778 CA5BP1Q8WTZ4 195 aa19.09■□□□□ 0.65
CLN3-219ENST00000565778 JSRP1Q96MG2 331 aaPredicted RBP19.09■□□□□ 0.65
CLN3-219ENST00000565778 BCAP29Q9UHQ4 241 aa19.09■□□□□ 0.65
CLN3-219ENST00000565778 BOKQ9UMX3 212 aaPredicted RBP19.09■□□□□ 0.65
CLN3-219ENST00000565778 NPFFR2Q9Y5X5 522 aa19.09■□□□□ 0.65
CLN3-219ENST00000565778 CHCHD2Q9Y6H1 151 aaPredicted RBP19.09■□□□□ 0.65
CLN3-219ENST00000565778 CENPEQ02224 2701 aa19.09■□□□□ 0.65
CLN3-219ENST00000565778 SMIM23A6NLE4 172 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 TP53I11O14683 189 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 GLRA3O75311 464 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 IGHG3P01860 377 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 PRF1P14222 555 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 CCT5P48643 541 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 MAN2A2P49641 1150 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 NRG3P56975 720 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 BTKQ06187 659 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 MAP4K2Q12851 820 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 NTRK2Q16620 822 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 SCIMPQ6UWF3 145 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 TRILQ7L0X0 811 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 SRRM1Q8IYB3 904 aaKnown RBP19.08■□□□□ 0.64
CLN3-219ENST00000565778 VWA5B2Q8N398 1253 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 ZNF441Q8N8Z8 693 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 DIO2Q92813 273 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 KLHL29Q96CT2 875 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 SMC6Q96SB8 1091 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 DOHHQ9BU89 302 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 MID1IP1Q9NPA3 183 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 ZFP64Q9NPA5 681 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 MCM8Q9UJA3 840 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 ACAD8Q9UKU7 415 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 GRID1Q9ULK0 1009 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 LIPGQ9Y5X9 500 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 TEX15Q9BXT5 2789 aa19.08■□□□□ 0.64
CLN3-219ENST00000565778 GNG14A0A1W2PPG7 69 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 OR14I1A6ND48 311 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 BCKDKO14874 412 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 SUSD5O60279 629 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 LRATO95237 230 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 ATP1B1P05026 303 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 ENO1P06733 434 aaKnown RBP19.07■□□□□ 0.64
CLN3-219ENST00000565778 CELA3AP09093 270 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 S1PR1P21453 382 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 HTR6P50406 440 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 FBXW4P57775 412 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 HMGCS1Q01581 520 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 ACSM2AQ08AH3 577 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 PRICKLE4Q2TBC4 344 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 EMC4Q5J8M3 183 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 TMEM198Q66K66 360 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 ACSM2BQ68CK6 577 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 FAM180BQ6P0A1 224 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 ZNF585AQ6P3V2 769 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 ZYG11AQ6WRX3 759 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 ADCY4Q8NFM4 1077 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 RND1Q92730 232 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 ADIPOR1Q96A54 375 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 KCNA7Q96RP8 456 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 ACPTQ9BZG2 426 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 GSTO2Q9H4Y5 243 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 PROK2Q9HC23 129 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 PFDN4Q9NQP4 134 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 PNPLA3Q9NST1 481 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 UTS2RQ9UKP6 389 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 CNOT11Q9UKZ1 510 aaKnown RBP19.07■□□□□ 0.64
CLN3-219ENST00000565778 EMCNQ9ULC0 261 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 CFL2Q9Y281 166 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 DLGAP4Q9Y2H0 992 aa19.07■□□□□ 0.64
CLN3-219ENST00000565778 TRGV5A0A0B4J1U4 118 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 A0A1B0GVC2 190 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 G3V2L1 256 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 PCDH7O60245 1069 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 RFPL3SP0C7P2 107 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 TMED10P49755 219 aaKnown RBP19.06■□□□□ 0.64
CLN3-219ENST00000565778 NAGLUP54802 743 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 PMPCAQ10713 525 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 EXOSC7Q15024 291 aaKnown RBP19.06■□□□□ 0.64
CLN3-219ENST00000565778 CCDC153Q494R4 210 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 SPIN4Q56A73 249 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 CFAP157Q5JU67 520 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 SPDYAQ5MJ70 313 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 SH2D5Q6ZV89 423 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 TICAM1Q8IUC6 712 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 PRR22Q8IZ63 422 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 MARVELD2Q8N4S9 558 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 CCDC63Q8NA47 563 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 APIPQ96GX9 242 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 L2HGDHQ9H9P8 463 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 PPCSQ9HAB8 311 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 ALKBH4Q9NXW9 302 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 MAT2BQ9NZL9 334 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 TNFRSF10DQ9UBN6 386 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 HEY2Q9UBP5 337 aa19.06■□□□□ 0.64
CLN3-219ENST00000565778 EML6Q6ZMW3 1958 aa19.05■□□□□ 0.64
CLN3-219ENST00000565778 AQP7O14520 342 aa19.05■□□□□ 0.64
CLN3-219ENST00000565778 HCN1O60741 890 aa19.05■□□□□ 0.64
CLN3-219ENST00000565778 PROCP04070 461 aa19.05■□□□□ 0.64
CLN3-219ENST00000565778 IL3P08700 152 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms