RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 SLX4IPQ5VYV7 408 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 SLC30A6Q6NXT4 461 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 KRT74Q7RTS7 529 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 ZER1Q7Z7L7 766 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 CRIPAKQ8N1N5 446 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 BBS1Q8NFJ9 593 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 ZNF461Q8TAF7 563 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 ZG16BQ96DA0 208 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 MND1Q9BWT6 205 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 ANGPT4Q9Y264 503 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 H7C4K7 107 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 POLR1CO15160 346 aaPredicted RBP11.68□□□□□ -0.54
LDLR-205ENST00000557933 LATO43561 262 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 OR2B3O76000 313 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 CATP04040 527 aaKnown RBP11.68□□□□□ -0.54
LDLR-205ENST00000557933 H1F0P07305 194 aaKnown RBP11.68□□□□□ -0.54
LDLR-205ENST00000557933 RHCEP18577 417 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 PRPH2P23942 346 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 ASMTP46597 345 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 AP1S2P56377 157 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 EEF1A2Q05639 463 aaKnown RBP11.68□□□□□ -0.54
LDLR-205ENST00000557933 ZNF284Q2VY69 593 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 MLIPQ5VWP3 458 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 FAM205BPQ63HN1 556 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 ADCK2Q7Z695 626 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 SYT9Q86SS6 491 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 LAPTM4BQ86VI4 370 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 NANOGP1Q8N7R0 232 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 TMEM145Q8NBT3 493 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.68□□□□□ -0.542e-36■■■■■ 39.1
LDLR-205ENST00000557933 SENP5Q96HI0 755 aaPredicted RBP11.68□□□□□ -0.54
LDLR-205ENST00000557933 MAPKAP1Q9BPZ7 522 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 C1QTNF6Q9BXI9 259 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 SLC25A19Q9HC21 320 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 NDUFB11Q9NX14 153 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 SEC14L4Q9UDX3 406 aa11.68□□□□□ -0.54
LDLR-205ENST00000557933 MRPS7Q9Y2R9 242 aaKnown RBP11.68□□□□□ -0.54
LDLR-205ENST00000557933 A0A075B6Q4 140 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 PRAMEF27A3QJZ7 478 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 AGAP14A8MT82 685 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 MRPS14O60783 128 aaKnown RBP11.67□□□□□ -0.54
LDLR-205ENST00000557933 PQBP1O60828 265 aaKnown RBP11.67□□□□□ -0.54
LDLR-205ENST00000557933 GPR37L1O60883 481 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 FUT1P19526 365 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 IFNA8P32881 189 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 ATP6V1E1P36543 226 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 MAP2K3P46734 347 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 DGKGP49619 791 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 SRP54P61011 504 aaKnown RBP11.67□□□□□ -0.54
LDLR-205ENST00000557933 LYPLAL1Q5VWZ2 237 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 REEP3Q6NUK4 255 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 C19orf48Q6RUI8 117 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 OR4K5Q8NGD3 323 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 NLNQ9BYT8 704 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 HCFC1R1Q9NWW0 138 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 TEX10Q9NXF1 929 aaPredicted RBP11.67□□□□□ -0.54
LDLR-205ENST00000557933 ATP6V1HQ9UI12 483 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 TBX21Q9UL17 535 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 MYO9BQ13459 2157 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.67□□□□□ -0.54
LDLR-205ENST00000557933 CARNS1A5YM72 827 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 H0YIV9 168 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 ERAL1O75616 437 aaKnown RBP11.67□□□□□ -0.54
LDLR-205ENST00000557933 LIMS1P48059 325 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 AGFG1P52594 562 aaKnown RBP11.67□□□□□ -0.54
LDLR-205ENST00000557933 TMEM115Q12893 351 aaPredicted RBP11.67□□□□□ -0.54
LDLR-205ENST00000557933 BCL2L15Q5TBC7 163 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 VN1R5Q7Z5H4 357 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 ADGRF3Q8IZF5 1079 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 OXR1Q8N573 874 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 OR4M2Q8NGB6 313 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 OR6T1Q8NGN1 323 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 C9orf43Q8TAL5 461 aaPredicted RBP11.67□□□□□ -0.54
LDLR-205ENST00000557933 RNFT2Q96EX2 444 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 KCTD7Q96MP8 289 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 TRMT61BQ9BVS5 477 aaKnown RBP11.67□□□□□ -0.54
LDLR-205ENST00000557933 C3orf14Q9HBI5 128 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 DMRT3Q9NQL9 472 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 ACOXLQ9NUZ1 547 aa11.67□□□□□ -0.54
LDLR-205ENST00000557933 CUEDC1Q9NWM3 386 aaPredicted RBP11.67□□□□□ -0.54
LDLR-205ENST00000557933 MN1Q10571 1320 aaPredicted RBP11.66□□□□□ -0.54
LDLR-205ENST00000557933 NPC1O15118 1278 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 PRMT3O60678 531 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 ARAFP10398 606 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 MYL12AP19105 171 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 ENPP1P22413 925 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 ALAS2P22557 587 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 CLDN2P57739 230 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 STXBP1P61764 594 aaKnown RBP11.66□□□□□ -0.54
LDLR-205ENST00000557933 SPIN4Q56A73 249 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 SLC8B1Q6J4K2 584 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 SMARCD3Q6STE5 483 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 MARCH9Q86YJ5 346 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 OMA1Q96E52 524 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 SERHL2Q9H4I8 314 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 TDP1Q9NUW8 608 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 GRIP1Q9Y3R0 1128 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 HCFC2Q9Y5Z7 792 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 LOC105369274A0A096LPK9 316 aa11.66□□□□□ -0.54
LDLR-205ENST00000557933 A0A0B4J203 849 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms