RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	BTBD1	Q9H0C5	482 aa		4.75	□□□□□ -1.65
SYNE2-223	ENST00000557005	ELL3	Q9HB65	397 aa	Predicted RBP	4.75	□□□□□ -1.65
SYNE2-223	ENST00000557005	ASF1B	Q9NVP2	202 aa		4.75	□□□□□ -1.65
SYNE2-223	ENST00000557005	RLIM	Q9NVW2	624 aa		4.75	□□□□□ -1.65
SYNE2-223	ENST00000557005	MYEF2	Q9P2K5	600 aa	Known RBP	4.75	□□□□□ -1.65
SYNE2-223	ENST00000557005		A0A1W2PRU2	124 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	HYKK	A2RU49	373 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	RTCA	O00442	366 aa	Known RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	RNASET2	O00584	256 aa	Known RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	ERI3	O43414	337 aa	Known RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	HR	O43593	1189 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	PIP5K1C	O60331	668 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	FARS2	O95363	451 aa	Known RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	PAH	P00439	452 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	MAS1	P04201	325 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	PIM1	P11309	404 aa	Predicted RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	ERP29	P30040	261 aa	Known RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	RPS19	P39019	145 aa	Known RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SLC11A1	P49279	550 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	PGD	P52209	483 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	WNT4	P56705	351 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	OR12D2	P58182	307 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	ISL1	P61371	349 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	KCNJ10	P78508	379 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SELENBP1	Q13228	472 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	GALE	Q14376	348 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	PUM1	Q14671	1186 aa	Known RBP eCLIP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	EIF4H	Q15056	248 aa	Known RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZCCHC12	Q6PEW1	402 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SLC16A12	Q6ZSM3	486 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	WDR53	Q7Z5U6	358 aa	Predicted RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	PARG	Q86W56	976 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	PAQR7	Q86WK9	346 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SYT14	Q8NB59	555 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	OR52I1	Q8NGK6	324 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	OR9A1P	Q8NGU1	263 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	HMGCLL1	Q8TB92	370 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	FOXJ1	Q92949	421 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	MED30	Q96HR3	178 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZNF582	Q96NG8	517 aa	Predicted RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	FYTTD1	Q96QD9	318 aa	Known RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	F2RL3	Q96RI0	385 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	TTLL2	Q9BWV7	592 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	OR51J1	Q9H342	316 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	PIGU	Q9H490	435 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	NTN4	Q9HB63	628 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	FBXO8	Q9NRD0	319 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SOHLH2	Q9NX45	425 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	DOCK1	Q14185	1865 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	PRKY	O43930	277 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	KRT33A	O76009	404 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	EOMES	O95936	686 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	FAM163B	P0C2L3	166 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	GTF2F2	P13984	249 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZNF8	P17098	575 aa	Predicted RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SDHB	P21912	280 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	CHM	P24386	653 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	RBMS1	P29558	406 aa	Known RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	GNAL	P38405	381 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	ST3GAL3	Q11203	375 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	FGL2	Q14314	439 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	MBTPS1	Q14703	1052 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SMCO1	Q147U7	214 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	TMEM44	Q2T9K0	475 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	GFOD2	Q3B7J2	385 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SMUG1	Q53HV7	270 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	TMEM69	Q5SWH9	247 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SYT6	Q5T7P8	510 aa	Predicted RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	OR4C11	Q6IEV9	310 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SERPINA13P	Q6UXR4	307 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	RFPL4B	Q6ZWI9	263 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SYNPO	Q8N3V7	929 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	ANKK1	Q8NFD2	765 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	OR2L5	Q8NG80	312 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	OR8K5	Q8NH50	307 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	ARRDC2	Q8TBH0	407 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	TCEAL4	Q96EI5	215 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SLC41A3	Q96GZ6	507 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZCCHC3	Q9NUD5	404 aa	Known RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	NUDT15	Q9NV35	164 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SLC39A1	Q9NY26	324 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	CALML5	Q9NZT1	146 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	BTNL2	Q9UIR0	455 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SNX11	Q9Y5W9	270 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005		A0A1W2PRQ8	180 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	GRXCR2	A6NFK2	248 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	NPIPB15	A6NHN6	443 aa	Predicted RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	MANSC4	A6NHS7	340 aa	Predicted RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	FABP7	O15540	132 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	PROM1	O43490	865 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	PRICKLE3	O43900	615 aa	Predicted RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	PPP1R3D	O95685	299 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	LAMP2	P13473	410 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SELP	P16109	830 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	NAT1	P18440	290 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	RPS5	P46782	204 aa	Known RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	CXCR4	P61073	352 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	CDC20	Q12834	499 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	FGFBP1	Q14512	234 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	LASP1	Q14847	261 aa	Known RBP	4.74	□□□□□ -1.65

Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms