RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	RAP1GDS1	P52306	607 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	NAGLU	P54802	743 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	ARL4C	P56559	192 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	NRG3	P56975	720 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	ATP6V0D1	P61421	351 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	EEF1A1	P68104	462 aa	Known RBP	11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	FOXF2	Q12947	444 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	E2F2	Q14209	437 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	SETDB1	Q15047	1291 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	OR4D1	Q15615	310 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	DCST1	Q5T197	706 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	EEF1A1P5	Q5VTE0	462 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	TIGD3	Q6B0B8	471 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	PRSS57	Q6UWY2	283 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	LRRC70	Q7Z2Q7	622 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	ZCCHC7	Q8N3Z6	543 aa	Known RBP	11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	ZNF441	Q8N8Z8	693 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	PDPR	Q8NCN5	879 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	LRRN4CL	Q8ND94	238 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	SIMC1	Q8NDZ2	872 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	OR1J4	Q8NGS1	313 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	SPATA3	Q8NHX4	192 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	SLC44A1	Q8WWI5	657 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	TSPAN17	Q96FV3	270 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	TMEM41A	Q96HV5	264 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689		Q96MF0	132 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	ZFP3	Q96NJ6	502 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	TM9SF2	Q99805	663 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	SFXN3	Q9BWM7	321 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	CAB39L	Q9H9S4	337 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	TEX10	Q9NXF1	929 aa	Predicted RBP	11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	NIN	Q8N4C6	2090 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	FBN3	Q75N90	2809 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	GLOD5	A6NK44	160 aa		11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689		A8MXE2	369 aa		11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	PLPP1	O14494	284 aa		11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	GNB5	O14775	395 aa		11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	SMAD7	O15105	426 aa	Known RBP	11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	WISP3	O95389	354 aa	Predicted RBP	11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	CTAGE8	P0CG41	777 aa		11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	SLC35E2B	P0CK96	405 aa		11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	SLC35E2	P0CK97	266 aa		11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	CD1D	P15813	335 aa		11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	SSTR4	P31391	388 aa		11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	SLCO1A2	P46721	670 aa		11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	HNRNPH2	P55795	449 aa	Known RBP	11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	PPP2R2B	Q00005	443 aa		11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	DDX39B	Q13838	428 aa	Known RBP	11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	YRDC	Q86U90	279 aa	Known RBP	11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	CTAGE4	Q8IX94	777 aa		11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	FAM83F	Q8NEG4	500 aa	Predicted RBP	11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	HUS1B	Q8NHY5	278 aa		11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	INTS12	Q96CB8	462 aa	Known RBP	11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	NTNG2	Q96CW9	530 aa		11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	TUBA1C	Q9BQE3	449 aa		11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	MCMBP	Q9BTE3	642 aa		11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	DDX47	Q9H0S4	455 aa	Known RBP	11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	PIGM	Q9H3S5	423 aa		11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	WDR41	Q9HAD4	459 aa		11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	RNF112	Q9ULX5	631 aa		11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	MTO1	Q9Y2Z2	717 aa	Known RBP	11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	ASB4	Q9Y574	426 aa		11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689	NCKAP5	O14513	1909 aa		11.54	□□□□□ -0.56
SHMT2-223	ENST00000556689		A0A1W2PR48	441 aa		11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	FAM58BP	P0C7Q3	252 aa		11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	KRT15	P19012	456 aa		11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	PTX3	P26022	381 aa	Predicted RBP	11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	PTPN6	P29350	595 aa		11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	SOX18	P35713	384 aa		11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	PIK3CB	P42338	1070 aa		11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	ARFIP1	P53367	373 aa		11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	DIO3	P55073	304 aa		11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	SRY	Q05066	204 aa		11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	GAB1	Q13480	694 aa		11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	MRM1	Q6IN84	353 aa	Known RBP	11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	CYP20A1	Q6UW02	462 aa		11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	ENPP6	Q6UWR7	440 aa		11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	CXXC5	Q7LFL8	322 aa	Known RBP	11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	YTHDF3	Q7Z739	585 aa	Known RBP	11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	RNF175	Q8N4F7	328 aa		11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	FBXO36	Q8NEA4	188 aa		11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	WNT2B	Q93097	391 aa		11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	ADIPOR1	Q96A54	375 aa		11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	UCN2	Q96RP3	112 aa		11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	REPIN1	Q9BWE0	567 aa	Known RBP	11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	OR10A5	Q9H207	317 aa		11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	ACBD3	Q9H3P7	528 aa		11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	METTL7A	Q9H8H3	244 aa		11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	CXorf21	Q9HAI6	301 aa		11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	LYAR	Q9NX58	379 aa	Known RBP	11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	C6orf203	Q9P0P8	240 aa	Predicted RBP	11.53	□□□□□ -0.56
SHMT2-223	ENST00000556689	FN1	P02751	2386 aa	Known RBP	11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689		H0Y3Z8	333 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689		K7EPI3	171 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	PHGDH	O43175	533 aa	Known RBP	11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	PIAS1	O75925	651 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	ABCB1	P08183	1280 aa	Predicted RBP	11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	NR2F6	P10588	404 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	STMN1	P16949	149 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	FPR1	P21462	350 aa		11.52	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms