RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 PRPS2P11908 318 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 EPHA2P29317 976 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 SERPINA4P29622 427 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 RYKP34925 604 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 PTGER3P43115 390 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 FBXW4P57775 412 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 MEF2AQ02078 507 aaPredicted RBP5.21□□□□□ -1.57
LIMA1-203ENST00000547825 SCARB2Q14108 478 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 EFR3AQ14156 821 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 EXOC3L2Q2M3D2 409 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 UBXN11Q5T124 520 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 GARNL3Q5VVW2 1013 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 OLFML2AQ68BL7 652 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 RANBP10Q6VN20 620 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 CXXC5Q7LFL8 322 aaKnown RBP5.21□□□□□ -1.57
LIMA1-203ENST00000547825 RD3Q7Z3Z2 195 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 LYSMD2Q8IV50 215 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 CDK20Q8IZL9 346 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 ELMOD1Q8N336 334 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 IQCF1Q8N6M8 205 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 YIPF7Q8N8F6 280 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 PAPD5Q8NDF8 572 aaKnown RBP5.21□□□□□ -1.57
LIMA1-203ENST00000547825 ATP6V1C2Q8NEY4 427 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 FUBP1Q96AE4 644 aaKnown RBP5.21□□□□□ -1.57
LIMA1-203ENST00000547825 MRPL9Q9BYD2 267 aaKnown RBP5.21□□□□□ -1.57
LIMA1-203ENST00000547825 AMBRA1Q9C0C7 1298 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 OR51B5Q9H339 312 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 GPRC5BQ9NZH0 403 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 CD300AQ9UGN4 299 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 NUP50Q9UKX7 468 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 PCM1Q15154 2024 aa5.21□□□□□ -1.57
LIMA1-203ENST00000547825 TNRC6BQ9UPQ9 1833 aaKnown RBP5.21□□□□□ -1.57
LIMA1-203ENST00000547825 MUC22E2RYF6 1773 aaPredicted RBP5.21□□□□□ -1.57
LIMA1-203ENST00000547825 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-203ENST00000547825 GNB5O14775 395 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 EEF1E1O43324 174 aaKnown RBP5.21□□□□□ -1.58
LIMA1-203ENST00000547825 HCN1O60741 890 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 SEC14L2O76054 403 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 CLDN7O95471 211 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 CSN2P05814 226 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 LPLP06858 475 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 INHBBP09529 407 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 HOXA11P31270 313 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-203ENST00000547825 CNR2P34972 360 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 LIPAP38571 399 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 AVPR1BP47901 424 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 CCR4P51679 360 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 ST8SIA6P61647 398 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 TSPAN5P62079 268 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 BTN1A1Q13410 526 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 BTG3Q14201 252 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-203ENST00000547825 RCAN2Q14206 197 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 HEPACAMQ14CZ8 416 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 VMACQ2NL98 169 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 CTU2Q2VPK5 515 aaKnown RBP5.21□□□□□ -1.58
LIMA1-203ENST00000547825 FRG2Q64ET8 278 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 PNCKQ6P2M8 343 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 LILRA6Q6PI73 481 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 HACD2Q6Y1H2 254 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 B3GLCTQ6Y288 498 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 BEND5Q7L4P6 421 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 LINGO2Q7L985 606 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 PRSS48Q7RTY5 328 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 RBM23Q86U06 439 aaKnown RBP5.21□□□□□ -1.58
LIMA1-203ENST00000547825 IQCHQ86VS3 1027 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 TSPYL5Q86VY4 417 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-203ENST00000547825 ZSWIM9Q86XI8 627 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 FAM20CQ8IXL6 584 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 PIANPQ8IYJ0 282 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 SAMD12Q8N8I0 201 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 UFD1Q92890 307 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 IRF7Q92985 503 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 REPS1Q96D71 796 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 FRG2BQ96QU4 278 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 SLC35A5Q9BS91 424 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 ZDHHC5Q9C0B5 715 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 DERL2Q9GZP9 239 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 CWH43Q9H720 699 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 EXTL2Q9UBQ6 330 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 MSRAQ9UJ68 235 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 MGAT4AQ9UM21 535 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 ZFR2Q9UPR6 939 aaKnown RBP5.21□□□□□ -1.58
LIMA1-203ENST00000547825 ASF1AQ9Y294 204 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 GPR52Q9Y2T5 361 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 TMEM98Q9Y2Y6 226 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 DHRS7Q9Y394 339 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 CD8B2A6NJW9 211 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 SULT1C4O75897 302 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 BCHEP06276 602 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 SAGP10523 405 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-203ENST00000547825 CD8BP10966 210 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 ETFAP13804 333 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 OGNP20774 298 aaKnown RBP5.21□□□□□ -1.58
LIMA1-203ENST00000547825 CORO1AP31146 461 aaKnown RBP5.21□□□□□ -1.58
LIMA1-203ENST00000547825 ATP4BP51164 291 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 CLCN4P51793 760 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 CDK6Q00534 326 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 CHRNA6Q15825 494 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 UGT3A2Q3SY77 523 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 FBXO43Q4G163 708 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms