RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 HKDC1Q2TB90 917 aa3.25□□□□□ -1.89
CD44-215ENST00000525241 C2orf76Q3KRA6 126 aa3.25□□□□□ -1.89
CD44-215ENST00000525241 ACER2Q5QJU3 275 aa3.25□□□□□ -1.89
CD44-215ENST00000525241 TAF3Q5VWG9 929 aa3.25□□□□□ -1.89
CD44-215ENST00000525241 PRAMEF7Q5VXH5 474 aa3.25□□□□□ -1.89
CD44-215ENST00000525241 ASRGL1Q7L266 308 aa3.25□□□□□ -1.89
CD44-215ENST00000525241 ARL14Q8N4G2 192 aa3.25□□□□□ -1.89
CD44-215ENST00000525241 CD177Q8N6Q3 437 aa3.25□□□□□ -1.89
CD44-215ENST00000525241 TBCKQ8TEA7 893 aa3.25□□□□□ -1.89
CD44-215ENST00000525241 BIRC7Q96CA5 298 aa3.25□□□□□ -1.89
CD44-215ENST00000525241 ZBED6CLQ96FA7 236 aaPredicted RBP3.25□□□□□ -1.89
CD44-215ENST00000525241 C19orf43Q9BQ61 176 aa3.25□□□□□ -1.89
CD44-215ENST00000525241 TRPV6Q9H1D0 765 aa3.25□□□□□ -1.89
CD44-215ENST00000525241 RNF41Q9H4P4 317 aaPredicted RBP3.25□□□□□ -1.89
CD44-215ENST00000525241 ADGRL4Q9HBW9 690 aa3.25□□□□□ -1.89
CD44-215ENST00000525241 CIDEBQ9UHD4 219 aa3.25□□□□□ -1.89
CD44-215ENST00000525241 IKZF3Q9UKT9 509 aa3.25□□□□□ -1.89
CD44-215ENST00000525241 EMCNQ9ULC0 261 aa3.25□□□□□ -1.89
CD44-215ENST00000525241 KLHDC2Q9Y2U9 406 aa3.25□□□□□ -1.89
CD44-215ENST00000525241 TEX264Q9Y6I9 313 aa3.25□□□□□ -1.89
CD44-215ENST00000525241 DHX29Q7Z478 1369 aaKnown RBP3.25□□□□□ -1.89
CD44-215ENST00000525241 NPC1L1Q9UHC9 1359 aa3.25□□□□□ -1.89
CD44-215ENST00000525241 IGHV3OR16-12A0A075B7B8 117 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 ZSCAN5CA6NGD5 496 aaPredicted RBP3.24□□□□□ -1.89
CD44-215ENST00000525241 CCDC69A6NI79 296 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 SAP18O00422 153 aaKnown RBP3.24□□□□□ -1.89
CD44-215ENST00000525241 VEGFDO43915 354 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 PNPP00491 289 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 GOT2P00505 430 aaKnown RBP3.24□□□□□ -1.89
CD44-215ENST00000525241 IGHV3-9P01782 118 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 UMPSP11172 480 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 MFAP2P55001 183 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 PPIAP62937 165 aaKnown RBP3.24□□□□□ -1.89
CD44-215ENST00000525241 CCZ1BP86790 482 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 CCZ1P86791 482 aaPredicted RBP3.24□□□□□ -1.89
CD44-215ENST00000525241 TSTA3Q13630 321 aaPredicted RBP3.24□□□□□ -1.89
CD44-215ENST00000525241 CNPY1Q3B7I2 92 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 RNF212Q495C1 297 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 TCHHL1Q5QJ38 904 aaPredicted RBP3.24□□□□□ -1.89
CD44-215ENST00000525241 UTF1Q5T230 341 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 HIST2H2AA3Q6FI13 130 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 TOM1L2Q6ZVM7 507 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 SH2D6Q7Z4S9 175 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 DTD2Q96FN9 168 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 ZNF560Q96MR9 790 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 ACCSQ96QU6 501 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 GPR174Q9BXC1 333 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 NRN1Q9NPD7 142 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 PRMT8Q9NR22 394 aaPredicted RBP3.24□□□□□ -1.89
CD44-215ENST00000525241 TNFRSF19Q9NS68 423 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 ERVK-18Q9QC07 812 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 VSIG4Q9Y279 399 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 PTPRUQ92729 1446 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 ADAMTS9Q9P2N4 1935 aa3.24□□□□□ -1.89
CD44-215ENST00000525241 ABCA7Q8IZY2 2146 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 CYB561D2O14569 222 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 NME2P1O60361 137 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 LRP3O75074 770 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 RHBDL1O75783 438 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 OLFM2O95897 454 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 APRTP07741 180 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 GIG44P09565 113 aaPredicted RBP3.23□□□□□ -1.89
CD44-215ENST00000525241 HIST1H2AGP0C0S8 130 aaPredicted RBP3.23□□□□□ -1.89
CD44-215ENST00000525241 ARHGDIAP52565 204 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 ARF5P84085 180 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 GALK2Q01415 458 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 PPP1R3AQ16821 1122 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 PAMR1Q6UXH9 720 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 APOOLQ6UXV4 268 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 LUZP1Q86V48 1076 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.23□□□□□ -1.89
CD44-215ENST00000525241 C11orf53Q8IXP5 236 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 SPC24Q8NBT2 197 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 ZNF671Q8TAW3 534 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 GTSF1Q8WW33 167 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 CRYGNQ8WXF5 182 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 HIST1H2ACQ93077 130 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 EEF2KMTQ96G04 330 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 PIWIL1Q96J94 861 aaKnown RBP3.23□□□□□ -1.89
CD44-215ENST00000525241 CCDC43Q96MW1 224 aaKnown RBP3.23□□□□□ -1.89
CD44-215ENST00000525241 CPXM1Q96SM3 734 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 CARD9Q9H257 536 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.23□□□□□ -1.89
CD44-215ENST00000525241 HMG20BQ9P0W2 317 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 ABCD2Q9UBJ2 740 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 MTRRQ9UBK8 725 aa3.23□□□□□ -1.89
CD44-215ENST00000525241 TRMT6Q9UJA5 497 aaKnown RBP3.23□□□□□ -1.89
CD44-215ENST00000525241 SYNJ2O15056 1496 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 FAM168BA1KXE4 195 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 MACROD2A1Z1Q3 448 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 ARPC1BO15143 372 aaKnown RBP3.22□□□□□ -1.89
CD44-215ENST00000525241 TSC22D2O75157 780 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 ABHD2P08910 425 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 SNRPCP09234 159 aaKnown RBP3.22□□□□□ -1.89
CD44-215ENST00000525241 ATP6V1B1P15313 513 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 ZNF18P17022 549 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 FASP25445 335 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 SAA4P35542 130 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 CCL11P51671 97 aa3.22□□□□□ -1.89
CD44-215ENST00000525241 SLC7A2P52569 658 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms