RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 ATP6V0D1P61421 351 aa13.4□□□□□ -0.26
TRAF4-212ENST00000498540 PDIA2Q13087 525 aaKnown RBP13.4□□□□□ -0.26
TRAF4-212ENST00000498540 RCAN2Q14206 197 aa13.4□□□□□ -0.26
TRAF4-212ENST00000498540 CAPN12Q6ZSI9 719 aa13.4□□□□□ -0.26
TRAF4-212ENST00000498540 YRDCQ86U90 279 aaKnown RBP13.4□□□□□ -0.26
TRAF4-212ENST00000498540 FAM83FQ8NEG4 500 aaPredicted RBP13.4□□□□□ -0.26
TRAF4-212ENST00000498540 ZPLD1Q8TCW7 415 aa13.4□□□□□ -0.26
TRAF4-212ENST00000498540 ISL2Q96A47 359 aa13.4□□□□□ -0.26
TRAF4-212ENST00000498540 TP53INP1Q96A56 240 aa13.4□□□□□ -0.26
TRAF4-212ENST00000498540 NTNG2Q96CW9 530 aa13.4□□□□□ -0.26
TRAF4-212ENST00000498540 TMEM41AQ96HV5 264 aa13.4□□□□□ -0.26
TRAF4-212ENST00000498540 SECISBP2Q96T21 854 aaKnown RBP13.4□□□□□ -0.26
TRAF4-212ENST00000498540 MTERF1Q99551 399 aaKnown RBP13.4□□□□□ -0.26
TRAF4-212ENST00000498540 TUBA1CQ9BQE3 449 aa13.4□□□□□ -0.26
TRAF4-212ENST00000498540 SNX15Q9NRS6 342 aa13.4□□□□□ -0.26
TRAF4-212ENST00000498540 NSMCE4AQ9NXX6 385 aa13.4□□□□□ -0.26
TRAF4-212ENST00000498540 ASB4Q9Y574 426 aa13.4□□□□□ -0.26
TRAF4-212ENST00000498540 A0A0A6YYD5 115 aa13.39□□□□□ -0.27
TRAF4-212ENST00000498540 CXorf49A8MYA2 514 aaPredicted RBP13.39□□□□□ -0.27
TRAF4-212ENST00000498540 AIFM1O95831 613 aa13.39□□□□□ -0.27
TRAF4-212ENST00000498540 CT62P0C5K7 136 aa13.39□□□□□ -0.27
TRAF4-212ENST00000498540 CYP4B1P13584 511 aa13.39□□□□□ -0.27
TRAF4-212ENST00000498540 TMED10P49755 219 aaKnown RBP13.39□□□□□ -0.27
TRAF4-212ENST00000498540 TIGD3Q6B0B8 471 aa13.39□□□□□ -0.27
TRAF4-212ENST00000498540 DESI1Q6ICB0 168 aa13.39□□□□□ -0.27
TRAF4-212ENST00000498540 MRM1Q6IN84 353 aaKnown RBP13.39□□□□□ -0.27
TRAF4-212ENST00000498540 GRHL2Q6ISB3 625 aa13.39□□□□□ -0.27
TRAF4-212ENST00000498540 P3H2Q8IVL5 708 aa13.39□□□□□ -0.27
TRAF4-212ENST00000498540 SLC35F6Q8N357 371 aa13.39□□□□□ -0.27
TRAF4-212ENST00000498540 ADIPOR1Q96A54 375 aa13.39□□□□□ -0.27
TRAF4-212ENST00000498540 TSPAN17Q96FV3 270 aa13.39□□□□□ -0.27
TRAF4-212ENST00000498540 UBXN10Q96LJ8 280 aa13.39□□□□□ -0.27
TRAF4-212ENST00000498540 Q96MF0 132 aa13.39□□□□□ -0.27
TRAF4-212ENST00000498540 SFXN3Q9BWM7 321 aa13.39□□□□□ -0.27
TRAF4-212ENST00000498540 ALG9Q9H6U8 611 aa13.39□□□□□ -0.27
TRAF4-212ENST00000498540 CXorf21Q9HAI6 301 aa13.39□□□□□ -0.27
TRAF4-212ENST00000498540 SNX12Q9UMY4 172 aa13.39□□□□□ -0.27
TRAF4-212ENST00000498540 RTTNQ86VV8 2226 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 E7ESA3 106 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 K7EPI3 171 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 SMAD7O15105 426 aaKnown RBP13.38□□□□□ -0.27
TRAF4-212ENST00000498540 SIAH2O43255 324 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 SMPD2O60906 423 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 SEC31AO94979 1220 aaKnown RBP13.38□□□□□ -0.27
TRAF4-212ENST00000498540 ACTL6AO96019 429 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 SLC35E2BP0CK96 405 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 SLC35E2P0CK97 266 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 STMN1P16949 149 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 GALNSP34059 522 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 BSGP35613 385 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 PIK3CBP42338 1070 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 RPS13P62277 151 aaKnown RBP13.38□□□□□ -0.27
TRAF4-212ENST00000498540 PCDH1Q08174 1060 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 SETDB1Q15047 1291 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 ZKSCAN8Q15776 578 aaPredicted RBP13.38□□□□□ -0.27
TRAF4-212ENST00000498540 HLA-DQA1Q5Y7H0 255 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 ANGPTL8Q6UXH0 198 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 ADGRE4PQ86SQ3 457 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 GCNT2Q8N0V5 402 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 LRRC75A-AS1Q8N1F1 130 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 ZNF615Q8N8J6 731 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 OR1J4Q8NGS1 313 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 UBTD2Q8WUN7 234 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 INTS12Q96CB8 462 aaKnown RBP13.38□□□□□ -0.27
TRAF4-212ENST00000498540 GPR22Q99680 433 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 CENPKQ9BS16 269 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 G6PC3Q9BUM1 346 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 LYARQ9NX58 379 aaKnown RBP13.38□□□□□ -0.27
TRAF4-212ENST00000498540 NUDT4Q9NZJ9 180 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 C6orf203Q9P0P8 240 aaPredicted RBP13.38□□□□□ -0.27
TRAF4-212ENST00000498540 OPTCQ9UBM4 332 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 FETUBQ9UGM5 382 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 ADGRE2Q9UHX3 823 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 EIF3LQ9Y262 564 aaKnown RBP13.38□□□□□ -0.27
TRAF4-212ENST00000498540 DTX4Q9Y2E6 619 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 TESMINQ9Y4I5 508 aa13.38□□□□□ -0.27
TRAF4-212ENST00000498540 HIVEP2P31629 2446 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 C2orf72A6NCS6 295 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 SUPT3HB4E1H0 165 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 H0Y3Z8 333 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 UBXN8O00124 270 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 CES2O00748 559 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 PGRMC2O15173 223 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 SUPT3HO75486 399 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 RCBTB2O95199 551 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 ABCB1P08183 1280 aaPredicted RBP13.37□□□□□ -0.27
TRAF4-212ENST00000498540 FAM58BPP0C7Q3 252 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 CPN1P15169 458 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 ABCD3P28288 659 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 CPOXP36551 454 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 NRG3P56975 720 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 SRYQ05066 204 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 FUT7Q11130 342 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 DLG1Q12959 904 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 NNATQ16517 81 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 MYLK4Q86YV6 388 aaPredicted RBP13.37□□□□□ -0.27
TRAF4-212ENST00000498540 GALNT12Q8IXK2 581 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 KLHL7Q8IXQ5 586 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 ZBED8Q8IZ13 594 aa13.37□□□□□ -0.27
TRAF4-212ENST00000498540 ZFP3Q96NJ6 502 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms