RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 MTRF1O75570 445 aaKnown RBP15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 PDE9AO76083 593 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 HBQ1P09105 142 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 PSMB5P28074 263 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 SLC6A11P48066 632 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 ZNF91Q05481 1191 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 HEPACAMQ14CZ8 416 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 SPHARQ15513 63 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 SYPL1Q16563 259 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 TMEM52BQ4KMG9 183 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 SIGIRRQ6IA17 410 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 UBE3DQ7Z6J8 389 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 SLC34A3Q8N130 599 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 NATD1Q8N6N6 113 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 CELF5Q8N6W0 485 aaKnown RBP15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 CELF2-AS1Q8N7Q2 184 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 NANOGP1Q8N7R0 232 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 IL17RDQ8NFM7 739 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 RSPRY1Q96DX4 576 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 COX14Q96I36 57 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 AIF1LQ9BQI0 150 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 SLC30A2Q9BRI3 323 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 SFXN1Q9H9B4 322 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 SMURF1Q9HCE7 757 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 ERVK13-1Q9NX77 482 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 TEX10Q9NXF1 929 aaPredicted RBP15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 TRAPPC4Q9Y296 219 aa15.21■□□□□ 0.03
MSH5-SAPCD1-208ENST00000498473 CKAP5Q14008 2032 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 HEATR5BQ9P2D3 2071 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 LOC105371267A0A1B0GV96 52 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 CACNB4O00305 520 aaPredicted RBP15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SLC9A3R1O14745 358 aaPredicted RBP15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SLITRK5O94991 958 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 CD72P21854 359 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 REEP5Q00765 189 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 OCLNQ16625 522 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 HNRNPA1L2Q32P51 320 aaKnown RBP15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 PAQR6Q6TCH4 344 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TCEANCQ8N8B7 351 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 LILRB4Q8NHJ6 448 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 HOXD1Q9GZZ0 328 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 POLR2J3Q9H1A7 115 aaKnown RBP15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 C3orf14Q9HBI5 128 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SEMA3GQ9NS98 782 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 C14orf119Q9NWQ9 140 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TBC1D24Q9ULP9 559 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 A0A1W2PPV9 198 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 H3BN98 237 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 WWP2O00308 870 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 HOXC11O43248 304 aaPredicted RBP15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 UBL4AP11441 157 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TCEA1P23193 301 aaKnown RBP15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 CCT3P49368 545 aaKnown RBP15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 CNTN1Q12860 1018 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 PIN1Q13526 163 aaPredicted RBP15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SPDYE7PQ495Y7 208 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 RNLSQ5VYX0 342 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SFTPA1Q8IWL2 248 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ETFBKMTQ8IXQ9 262 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 OR8J1Q8NGP2 316 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 OR8D1Q8WZ84 308 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ZFYVE19Q96K21 471 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TREX2Q9BQ50 279 aaPredicted RBP15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 CCDC32Q9BV29 185 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TSSK6Q9BXA6 273 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 EXOSC4Q9NPD3 245 aaKnown RBP15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TM7SF3Q9NS93 570 aa15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 RPL36Q9Y3U8 105 aaKnown RBP15.2■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 WDR87Q6ZQQ6 2873 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 PDZK1P1A8MUH7 402 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 H7BY64 318 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 RGS13O14921 159 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 DYRK3O43781 588 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SLC28A2O43868 658 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 OR12D1P0DN82 309 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 DDX5P17844 614 aaKnown RBP15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TARDBPQ13148 414 aaKnown RBP eCLIP15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 RPA4Q13156 261 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 KRR1Q13601 381 aaKnown RBP15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SUZ12Q15022 739 aaKnown RBP15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 FNDC3BQ53EP0 1204 aaKnown RBP15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 PODNL1Q6PEZ8 512 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 CASP12Q6UXS9 341 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 GDPGP1Q6ZNW5 385 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ERN2Q76MJ5 926 aaKnown RBP15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 OLIG3Q7RTU3 272 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 AMZ2Q86W34 360 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TBC1D19Q8N5T2 526 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ESX1Q8N693 406 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 IQCF1Q8N6M8 205 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TP53I13Q8NBR0 393 aaPredicted RBP15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 OR5K2Q8NHB8 316 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ASB15Q8WXK1 588 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 FGF13Q92913 245 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 FGF11Q92914 225 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 PRAP1Q96NZ9 151 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TEFMQ96QE5 360 aaKnown RBP15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SEC14L4Q9UDX3 406 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SEC14L3Q9UDX4 400 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms