RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 SNX8Q9Y5X2 465 aa11.08□□□□□ -0.64
CUX1-210ENST00000497815 SEC16AO15027 2179 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 PRSS51A0A1B0GVH4 220 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 CCDC154A6NI56 674 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 NME6O75414 186 aaPredicted RBP11.07□□□□□ -0.64
CUX1-210ENST00000497815 CLPSP04118 112 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 IL6P05231 212 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 SOAT1P35610 550 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 SOX18P35713 384 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 MRPL19P49406 292 aaKnown RBP11.07□□□□□ -0.64
CUX1-210ENST00000497815 CLCN2P51788 898 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 GPR143P51810 404 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 IRX1P78414 480 aaPredicted RBP11.07□□□□□ -0.64
CUX1-210ENST00000497815 MAP4K2Q12851 820 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 SPDYE7PQ495Y7 208 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 GKAP1Q5VSY0 366 aaPredicted RBP11.07□□□□□ -0.64
CUX1-210ENST00000497815 FCRLBQ6BAA4 426 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 BLOC1S3Q6QNY0 202 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 HSDL2Q6YN16 418 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 RNF111Q6ZNA4 994 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 GPR155Q7Z3F1 870 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 MTDHQ86UE4 582 aaKnown RBP11.07□□□□□ -0.64
CUX1-210ENST00000497815 FUNDC1Q8IVP5 155 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 CPSF7Q8N684 471 aaKnown RBP11.07□□□□□ -0.64
CUX1-210ENST00000497815 NATD1Q8N6N6 113 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 VPS37AQ8NEZ2 397 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 OR52R1Q8NGF1 315 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 ZNF675Q8TD23 568 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 ELP5Q8TE02 316 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 SNRNP27Q8WVK2 155 aaKnown RBP11.07□□□□□ -0.64
CUX1-210ENST00000497815 OR5P2Q8WZ92 322 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 ELP4Q96EB1 424 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 GAL3ST4Q96RP7 486 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 DEFB126Q9BYW3 111 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 LHPPQ9H008 270 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 OR10A5Q9H207 317 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 PRORYQ9H606 182 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 LIN28AQ9H9Z2 209 aaKnown RBP11.07□□□□□ -0.64
CUX1-210ENST00000497815 DDX18Q9NVP1 670 aaKnown RBP11.07□□□□□ -0.64
CUX1-210ENST00000497815 GPR83Q9NYM4 423 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 PTGFRNQ9P2B2 879 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 PCDHGB4Q9UN71 923 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 ARL2BPQ9Y2Y0 163 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 CHD8Q9HCK8 2581 aa11.07□□□□□ -0.64
CUX1-210ENST00000497815 RNASET2O00584 256 aaKnown RBP11.06□□□□□ -0.64
CUX1-210ENST00000497815 PRKNO60260 465 aaPredicted RBP11.06□□□□□ -0.64
CUX1-210ENST00000497815 CCDC22O60826 627 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 SCN2BO60939 215 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 CBX7O95931 251 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 IGKV3-11P04433 115 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 CAPN3P20807 821 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 S1PR1P21453 382 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 ST13P50502 369 aaKnown RBP11.06□□□□□ -0.64
CUX1-210ENST00000497815 PRKAG1P54619 331 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 SLC37A1P57057 533 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 HBA1P69905 142 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 FUT7Q11130 342 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 KLF10Q13118 480 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 DUSP8Q13202 625 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 RCAN2Q14206 197 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 VPS26BQ4G0F5 336 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 FHL5Q5TD97 284 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 B3GNTL1Q67FW5 361 aaPredicted RBP11.06□□□□□ -0.64
CUX1-210ENST00000497815 SLC2A7Q6PXP3 512 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 DNAJC14Q6Y2X3 702 aaPredicted RBP11.06□□□□□ -0.64
CUX1-210ENST00000497815 C16orf47Q6ZP98 133 aaPredicted RBP11.06□□□□□ -0.64
CUX1-210ENST00000497815 SLC29A4Q7RTT9 530 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 MTERF4Q7Z6M4 381 aaKnown RBP11.06□□□□□ -0.64
CUX1-210ENST00000497815 APLFQ8IW19 511 aaPredicted RBP11.06□□□□□ -0.64
CUX1-210ENST00000497815 C9orf40Q8IXQ3 194 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 CLEC4FQ8N1N0 589 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 OR7G1Q8NGA0 311 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 OR5AK3PQ8NH89 298 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 CTHRC1Q96CG8 243 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 SPDL1Q96EA4 605 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 ARHGAP9Q9BRR9 750 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 INPP5KQ9BT40 448 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 SEMA4CQ9C0C4 833 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 CXorf36Q9H7Y0 433 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 EQTNQ9NQ60 294 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 SIRT3Q9NTG7 399 aaPredicted RBP11.06□□□□□ -0.64
CUX1-210ENST00000497815 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.06□□□□□ -0.645e-24■■■■■ 156.6
CUX1-210ENST00000497815 FAM120CQ9NX05 1096 aaKnown RBP11.06□□□□□ -0.64
CUX1-210ENST00000497815 ZNF639Q9UID6 485 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 PPIEQ9UNP9 301 aaKnown RBP11.06□□□□□ -0.64
CUX1-210ENST00000497815 URB1O60287 2271 aaKnown RBP11.06□□□□□ -0.64
CUX1-210ENST00000497815 DMXL2Q8TDJ6 3036 aa11.06□□□□□ -0.64
CUX1-210ENST00000497815 UPK1AO00322 258 aa11.05□□□□□ -0.64
CUX1-210ENST00000497815 PLOD2O00469 737 aa11.05□□□□□ -0.64
CUX1-210ENST00000497815 NDUFAB1O14561 156 aa11.05□□□□□ -0.64
CUX1-210ENST00000497815 MAN1A2O60476 641 aa11.05□□□□□ -0.64
CUX1-210ENST00000497815 PLOD3O60568 738 aa11.05□□□□□ -0.64
CUX1-210ENST00000497815 PRAMEF2O60811 474 aa11.05□□□□□ -0.64
CUX1-210ENST00000497815 ZFAND5O76080 213 aa11.05□□□□□ -0.64
CUX1-210ENST00000497815 GSNP06396 782 aa11.05□□□□□ -0.64
CUX1-210ENST00000497815 CDKN2CP42773 168 aa11.05□□□□□ -0.64
CUX1-210ENST00000497815 POLE2P56282 527 aa11.05□□□□□ -0.64
CUX1-210ENST00000497815 AP2B1P63010 937 aa11.05□□□□□ -0.64
CUX1-210ENST00000497815 RNF4P78317 190 aa11.05□□□□□ -0.64
CUX1-210ENST00000497815 ZNF155Q12901 538 aaPredicted RBP11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms