RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 PIGMQ9H3S5 423 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 PPANQ9NQ55 473 aaKnown RBP7.47□□□□□ -1.21
USP39-216ENST00000490193 SNX15Q9NRS6 342 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 NDRG3Q9UGV2 375 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 TRPS1Q9UHF7 1281 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 PHF11Q9UIL8 331 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 ERVK-19Q9WJR5 959 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 SLC6A5Q9Y345 797 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 NPFFR2Q9Y5X5 522 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 PSAT1Q9Y617 370 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 MED12Q93074 2177 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 HEATR5AQ86XA9 2040 aa7.47□□□□□ -1.21
USP39-216ENST00000490193 ANK3Q12955 4377 aaKnown RBP7.46□□□□□ -1.22
USP39-216ENST00000490193 DEFB108AA8MXU0 73 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 CTIFO43310 598 aaKnown RBP7.46□□□□□ -1.22
USP39-216ENST00000490193 STK16O75716 305 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 GPR75O95800 540 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 C8BP07358 591 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 TLX1P31314 330 aaPredicted RBP7.46□□□□□ -1.22
USP39-216ENST00000490193 MC3RP41968 323 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 CPA2P48052 419 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 MASP1P48740 699 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 HSPA7P48741 367 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 DIO3P55073 304 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 FBXW4P57775 412 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 RPP38P78345 283 aaKnown RBP7.46□□□□□ -1.22
USP39-216ENST00000490193 IRF8Q02556 426 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 ILF2Q12905 390 aaKnown RBP7.46□□□□□ -1.22
USP39-216ENST00000490193 CHIT1Q13231 466 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 SLAMF1Q13291 335 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 GAB1Q13480 694 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 ZNF267Q14586 743 aaPredicted RBP7.46□□□□□ -1.22
USP39-216ENST00000490193 ACKR1Q16570 336 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 HIST2H2ACQ16777 129 aaPredicted RBP7.46□□□□□ -1.22
USP39-216ENST00000490193 EIPR1Q53HC9 387 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 WIPI1Q5MNZ9 446 aaPredicted RBP7.46□□□□□ -1.22
USP39-216ENST00000490193 DEPDC1Q5TB30 811 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 KHDRBS2Q5VWX1 349 aaKnown RBP7.46□□□□□ -1.22
USP39-216ENST00000490193 BICRALQ6AI39 1079 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 TIGD3Q6B0B8 471 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 HIST2H2AA3Q6FI13 130 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 OR4C11Q6IEV9 310 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 SULT1C3Q6IMI6 304 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 MRM1Q6IN84 353 aaKnown RBP7.46□□□□□ -1.22
USP39-216ENST00000490193 SCIMPQ6UWF3 145 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 C20orf204Q6ZNR8 217 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 LUZP2Q86TE4 346 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 GPR180Q86V85 440 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 RETREG3Q86VR2 466 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 VWA5B2Q8N398 1253 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 C17orf47Q8NEP4 570 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 IGFBPL1Q8WX77 278 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 UBE2E3Q969T4 207 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 CMTM7Q96FZ5 175 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 PBKQ96KB5 322 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 KRT12Q99456 494 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 NAP1L3Q99457 506 aaPredicted RBP7.46□□□□□ -1.22
USP39-216ENST00000490193 TUBA1CQ9BQE3 449 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 GSX2Q9BZM3 304 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 RBSNQ9H1K0 784 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 LZTFL1Q9NQ48 299 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 TEX10Q9NXF1 929 aaPredicted RBP7.46□□□□□ -1.22
USP39-216ENST00000490193 WWOXQ9NZC7 414 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 CLCF1Q9UBD9 225 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 ADGRE2Q9UHX3 823 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 PTBP2Q9UKA9 531 aaKnown RBP7.46□□□□□ -1.22
USP39-216ENST00000490193 TSC22D4Q9Y3Q8 395 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 TEX264Q9Y6I9 313 aa7.46□□□□□ -1.22
USP39-216ENST00000490193 TNFSF12-TNFSF13A0A0A6YY99 330 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 C2orf92A0A1B0GVN3 265 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 TRIM64A6NGJ6 449 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 TRIM64BA6NI03 449 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 NCF1BA6NI72 391 aaPredicted RBP7.45□□□□□ -1.22
USP39-216ENST00000490193 NCF1CA8MVU1 366 aaPredicted RBP7.45□□□□□ -1.22
USP39-216ENST00000490193 PGRMC1O00264 195 aaKnown RBP7.45□□□□□ -1.22
USP39-216ENST00000490193 PLPP1O14494 284 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 MSTNO14793 375 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 SMAD7O15105 426 aaKnown RBP7.45□□□□□ -1.22
USP39-216ENST00000490193 OR10H2O60403 315 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 CRLF1O75462 422 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 TNFSF13O75888 250 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 TGFB1P01137 390 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 RHOXF2BP0C7M4 288 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 SLC35E2BP0CK96 405 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 SLC35E2P0CK97 266 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 NCF1P14598 390 aaPredicted RBP7.45□□□□□ -1.22
USP39-216ENST00000490193 PAX1P15863 534 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 NAGAP17050 411 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 CRYGSP22914 178 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 CHMP24386 653 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 IVDP26440 423 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 BUD31P41223 144 aaPredicted RBP7.45□□□□□ -1.22
USP39-216ENST00000490193 ELK3P41970 407 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 HNRNPH2P55795 449 aaKnown RBP7.45□□□□□ -1.22
USP39-216ENST00000490193 MGAT5Q09328 741 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 FUT7Q11130 342 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 C18orf63Q68DL7 685 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 MED27Q6P2C8 311 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 TMEM64Q6YI46 380 aa7.45□□□□□ -1.22
USP39-216ENST00000490193 LRRC70Q7Z2Q7 622 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms