RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 SLCO4A1Q96BD0 722 aa2.06□□□□□ -2.08
VPS50-216ENST00000484954 AP2M1Q96CW1 435 aa2.06□□□□□ -2.08
VPS50-216ENST00000484954 FAM122AQ96E09 287 aa2.06□□□□□ -2.08
VPS50-216ENST00000484954 MRPL53Q96EL3 112 aaKnown RBP2.06□□□□□ -2.08
VPS50-216ENST00000484954 C16orf74Q96GX8 76 aa2.06□□□□□ -2.08
VPS50-216ENST00000484954 COG3Q96JB2 828 aa2.06□□□□□ -2.08
VPS50-216ENST00000484954 CCDC114Q96M63 670 aa2.06□□□□□ -2.08
VPS50-216ENST00000484954 GUCD1Q96NT3 240 aa2.06□□□□□ -2.08
VPS50-216ENST00000484954 JPH2Q9BR39 696 aaPredicted RBP2.06□□□□□ -2.08
VPS50-216ENST00000484954 MLPHQ9BV36 600 aaPredicted RBP2.06□□□□□ -2.08
VPS50-216ENST00000484954 TMEM206Q9H813 350 aa2.06□□□□□ -2.08
VPS50-216ENST00000484954 TMEM161AQ9NX61 479 aa2.06□□□□□ -2.08
VPS50-216ENST00000484954 MRTO4Q9UKD2 239 aaKnown RBP2.06□□□□□ -2.08
VPS50-216ENST00000484954 CDH7Q9ULB5 785 aa2.06□□□□□ -2.08
VPS50-216ENST00000484954 MTF2Q9Y483 593 aaPredicted RBP2.06□□□□□ -2.08
VPS50-216ENST00000484954 KIF7Q2M1P5 1343 aa2.06□□□□□ -2.08
VPS50-216ENST00000484954 HMCN1Q96RW7 5635 aa2.06□□□□□ -2.08
VPS50-216ENST00000484954 A0A0A6YYC8 382 aaPredicted RBP2.05□□□□□ -2.08
VPS50-216ENST00000484954 I3L1I5 382 aaPredicted RBP2.05□□□□□ -2.08
VPS50-216ENST00000484954 WDR46O15213 610 aaKnown RBP2.05□□□□□ -2.08
VPS50-216ENST00000484954 NUDT21O43809 227 aaKnown RBP2.05□□□□□ -2.08
VPS50-216ENST00000484954 APBB3O95704 486 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 TXNDC12O95881 172 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 CT45A8P0DMV1 189 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 CT45A9P0DMV2 189 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 PTPN4P29074 926 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 SERPINB6P35237 376 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 SLC7A2P52569 658 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 RPS4XP62701 263 aaKnown RBP2.05□□□□□ -2.08
VPS50-216ENST00000484954 PSG7Q13046 419 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 MSLNQ13421 630 aaPredicted RBP2.05□□□□□ -2.08
VPS50-216ENST00000484954 CT45A2Q5DJT8 189 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 CCDC158Q5M9N0 1113 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 CELF3Q5SZQ8 465 aaKnown RBP2.05□□□□□ -2.08
VPS50-216ENST00000484954 TAF3Q5VWG9 929 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 SIAH3Q8IW03 269 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 TUSC5Q8IXB3 177 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 OR7G3Q8NG95 312 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 UBTD2Q8WUN7 234 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 HAS2Q92819 552 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 IMMP1LQ96LU5 166 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 PRAM1Q96QH2 718 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 ZNF184Q99676 751 aaPredicted RBP2.05□□□□□ -2.08
VPS50-216ENST00000484954 KIR2DL4Q99706 377 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 CITED2Q99967 270 aaPredicted RBP2.05□□□□□ -2.08
VPS50-216ENST00000484954 VPS18Q9P253 973 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 DIMT1Q9UNQ2 313 aaKnown RBP2.05□□□□□ -2.08
VPS50-216ENST00000484954 EXOC7Q9UPT5 735 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 NEU3Q9UQ49 428 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 RNF115Q9Y4L5 304 aa2.05□□□□□ -2.08
VPS50-216ENST00000484954 IGLV8-61A0A075B6I0 122 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 A0A0A6YYD4 124 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 MFSD2BA6NFX1 497 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 G3V3Y1 287 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 NUDT14O95848 222 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 FCER2P06734 321 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 SNRPCP09234 159 aaKnown RBP2.04□□□□□ -2.08
VPS50-216ENST00000484954 OR1D4P47884 311 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 AFF2P51816 1311 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 RIPPLY3P57055 190 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 KCNK10P57789 538 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 HAND2P61296 217 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 ZNF85Q03923 595 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 CD47Q08722 323 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 KLF5Q13887 457 aaPredicted RBP2.04□□□□□ -2.08
VPS50-216ENST00000484954 SERTAD2Q14140 314 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 TCHHL1Q5QJ38 904 aaPredicted RBP2.04□□□□□ -2.08
VPS50-216ENST00000484954 GBP6Q6ZN66 633 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 TIFABQ6ZNK6 161 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 MSANTD1Q6ZTZ1 278 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 GPR142Q7Z601 462 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 LUZP1Q86V48 1076 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 HOOK3Q86VS8 718 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 VSIG1Q86XK7 387 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 TMEM126BQ8IUX1 230 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 LINC00518Q8N0U6 118 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 CCDC26Q8TAB7 109 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 NMUR2Q9GZQ4 415 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 SLC26A1Q9H2B4 701 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 ZNF702PQ9H963 129 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 ZCCHC17Q9NP64 241 aaKnown RBP2.04□□□□□ -2.08
VPS50-216ENST00000484954 MYOZ2Q9NPC6 264 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 ESM1Q9NQ30 184 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 DNAJC17Q9NVM6 304 aaKnown RBP2.04□□□□□ -2.08
VPS50-216ENST00000484954 SLC2A6Q9UGQ3 507 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 EMCNQ9ULC0 261 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 RPH3AQ9Y2J0 694 aaPredicted RBP2.04□□□□□ -2.08
VPS50-216ENST00000484954 ATG4BQ9Y4P1 393 aa2.04□□□□□ -2.08
VPS50-216ENST00000484954 CDC42BPBQ9Y5S2 1711 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 TNRQ92752 1358 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 YJEFN3A6XGL0 299 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 REC8O95072 547 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 CT45A10P0DMU9 189 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 MBL2P11226 248 aaPredicted RBP2.03□□□□□ -2.08
VPS50-216ENST00000484954 SCG2P13521 617 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 CPA3P15088 417 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 SAA4P35542 130 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 XCR1P46094 333 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 P2RY4P51582 365 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 ZNF131P52739 623 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms