RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 TRPC4Q9UBN4 977 aa13.18□□□□□ -0.3
CLK3-204ENST00000483723 GPC6Q9Y625 555 aaPredicted RBP13.18□□□□□ -0.3
CLK3-204ENST00000483723 U3KQA8 63 aa13.18□□□□□ -0.3
CLK3-204ENST00000483723 SCN2AQ99250 2005 aa13.17□□□□□ -0.3
CLK3-204ENST00000483723 H0YIG0 161 aa13.17□□□□□ -0.3
CLK3-204ENST00000483723 hCG_2039718K7EN88 272 aa13.17□□□□□ -0.3
CLK3-204ENST00000483723 PLOD3O60568 738 aa13.17□□□□□ -0.3
CLK3-204ENST00000483723 RECKO95980 971 aa13.17□□□□□ -0.3
CLK3-204ENST00000483723 RNH1P13489 461 aaKnown RBP13.17□□□□□ -0.3
CLK3-204ENST00000483723 DNAJA1P31689 397 aaKnown RBP13.17□□□□□ -0.3
CLK3-204ENST00000483723 ADARB1P78563 741 aaKnown RBP13.17□□□□□ -0.3
CLK3-204ENST00000483723 IGLV3-21P80748 117 aaPredicted RBP13.17□□□□□ -0.3
CLK3-204ENST00000483723 MRPS35P82673 323 aaKnown RBP13.17□□□□□ -0.3
CLK3-204ENST00000483723 FUT5Q11128 374 aa13.17□□□□□ -0.3
CLK3-204ENST00000483723 GRM7Q14831 915 aa13.17□□□□□ -0.3
CLK3-204ENST00000483723 DUSP7Q16829 419 aa13.17□□□□□ -0.3
CLK3-204ENST00000483723 MED25Q71SY5 747 aa13.17□□□□□ -0.3
CLK3-204ENST00000483723 CTHRC1Q96CG8 243 aa13.17□□□□□ -0.3
CLK3-204ENST00000483723 OR7D2Q96RA2 312 aa13.17□□□□□ -0.3
CLK3-204ENST00000483723 ADI1Q9BV57 179 aa13.17□□□□□ -0.3
CLK3-204ENST00000483723 BATF3Q9NR55 127 aa13.17□□□□□ -0.3
CLK3-204ENST00000483723 BAG5Q9UL15 447 aa13.17□□□□□ -0.3
CLK3-204ENST00000483723 C19orf53Q9UNZ5 99 aaPredicted RBP13.17□□□□□ -0.3
CLK3-204ENST00000483723 TMEM247A6NEH6 219 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 H0YAE9 185 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 SLC28A2O43868 658 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 LDB3O75112 727 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 SLC35E2P0CK97 266 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 ETS2P15036 469 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 FPR1P21462 350 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 KCNJ5P48544 419 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 CHN2P52757 468 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 GNA13Q14344 377 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 NR0B2Q15466 257 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 PRICKLE4Q2TBC4 344 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 ZNF528Q3MIS6 628 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 AMZ1Q400G9 498 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 RPS26P11Q5JNZ5 115 aaPredicted RBP13.16□□□□□ -0.3
CLK3-204ENST00000483723 OTUD3Q5T2D3 398 aaPredicted RBP13.16□□□□□ -0.3
CLK3-204ENST00000483723 HEPHL1Q6MZM0 1159 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 MFSD12Q6NUT3 480 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 CDC73Q6P1J9 531 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 RABEPKQ7Z6M1 372 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 DHRSXQ8N5I4 330 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 Q8N9G6 341 aaPredicted RBP13.16□□□□□ -0.3
CLK3-204ENST00000483723 ZBTB44Q8NCP5 570 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 GPR32P1Q8NGA4 272 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 BBS10Q8TAM1 723 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 SPPL2AQ8TCT8 520 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 GEMIN6Q8WXD5 167 aaKnown RBP13.16□□□□□ -0.3
CLK3-204ENST00000483723 N4BP2L2Q92802 583 aaPredicted RBP13.16□□□□□ -0.3
CLK3-204ENST00000483723 COL26A1Q96A83 441 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 CCDC74AQ96AQ1 378 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 SDCCAG3Q96C92 435 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 ZNF300Q96RE9 604 aaPredicted RBP13.16□□□□□ -0.3
CLK3-204ENST00000483723 ZNF347Q96SE7 839 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 ZNF607Q96SK3 696 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 RBM4BQ9BQ04 359 aaKnown RBP13.16□□□□□ -0.3
CLK3-204ENST00000483723 TREX2Q9BQ50 279 aaPredicted RBP13.16□□□□□ -0.3
CLK3-204ENST00000483723 RBM4Q9BWF3 364 aaKnown RBP13.16□□□□□ -0.3
CLK3-204ENST00000483723 RUBCNLQ9H714 662 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 FSCN3Q9NQT6 498 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 GIN1Q9NXP7 522 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 TMEM9Q9P0T7 183 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 PDP2Q9P2J9 529 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 LIPT1Q9Y234 373 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 PCDHGB3Q9Y5G1 929 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 KCNE3Q9Y6H6 103 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 SDK1Q7Z5N4 2213 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 ADAMTS9Q9P2N4 1935 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 A0A0G2JPF8 293 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 EME2A4GXA9 379 aaPredicted RBP13.16□□□□□ -0.3
CLK3-204ENST00000483723 DUXAA6NLW8 204 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 HNRNPCL2B2RXH8 293 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 HNRNPCL3B7ZW38 293 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 TOX3O15405 576 aaPredicted RBP13.16□□□□□ -0.3
CLK3-204ENST00000483723 SIGLEC6O43699 453 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 CTNSO60931 367 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 DIRAS1O95057 198 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 SNAP29O95721 258 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 UBTFL6P0CB48 400 aaPredicted RBP13.16□□□□□ -0.3
CLK3-204ENST00000483723 HNRNPCL4P0DMR1 293 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 NR2F1P10589 423 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 MYF6P23409 242 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 PPP2R1BP30154 601 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 PPM1FP49593 454 aaPredicted RBP13.16□□□□□ -0.3
CLK3-204ENST00000483723 CRISP3P54108 245 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 PPP1R8Q12972 351 aaKnown RBP13.16□□□□□ -0.3
CLK3-204ENST00000483723 GK3PQ14409 553 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 PUM1Q14671 1186 aaKnown RBP eCLIP13.16□□□□□ -0.3
CLK3-204ENST00000483723 FAM214AQ32MH5 1076 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 TMEM71Q6P5X7 295 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 ZCCHC12Q6PEW1 402 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 SLC23A3Q6PIS1 610 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 FAM111BQ6SJ93 734 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 USP51Q70EK9 711 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 CEP68Q76N32 757 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 SZRD1Q7Z422 152 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 ZNF595Q8IYB9 648 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 HS3ST5Q8IZT8 346 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms