RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 A4GNTQ9UNA3 340 aa9.24□□□□□ -0.93
USP39-214ENST00000474572 MGAT4BQ9UQ53 548 aa9.24□□□□□ -0.93
USP39-214ENST00000474572 CCDC88CQ9P219 2028 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 IGHV1OR15-9A0A0B4J2B8 117 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 A0A1W2PS29 197 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 KRBA1A5PL33 1030 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 GLOD5A6NK44 160 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 FAAHO00519 579 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 ZSCAN9O15535 394 aaPredicted RBP9.23□□□□□ -0.93
USP39-214ENST00000474572 GABARAPO95166 117 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 LGI1O95970 557 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 MT-ND2P03891 347 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 THEGLP0DJG4 465 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 SOX18P35713 384 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 SMIM11AP58511 58 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 PIGFQ07326 219 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 RUNX2Q13950 521 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 LASP1Q14847 261 aaKnown RBP9.23□□□□□ -0.93
USP39-214ENST00000474572 NPTX1Q15818 432 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 GPR153Q6NV75 609 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 KLHL17Q6TDP4 642 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 TMEM107Q6UX40 140 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 SLC16A12Q6ZSM3 486 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 USP53Q70EK8 1073 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 COMTD1Q86VU5 262 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 ANKRD13BQ86YJ7 626 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 LACC1Q8IV20 430 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 ARHGEF39Q8N4T4 335 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 AQP11Q8NBQ7 271 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 NUP43Q8NFH3 380 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 SLC37A2Q8TED4 501 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 PHF10Q8WUB8 498 aaKnown RBP9.23□□□□□ -0.93
USP39-214ENST00000474572 XAGE5Q8WWM1 108 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 PATE1Q8WXA2 126 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 NR4A3Q92570 626 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 YIPF6Q96EC8 236 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 ARHGDIGQ99819 225 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 PINK1Q9BXM7 581 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 DGCR6LQ9BY27 220 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 SLC38A1Q9H2H9 487 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 ZNF556Q9HAH1 456 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 IL21RQ9HBE5 538 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 GIN1Q9NXP7 522 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 ZNF226Q9NYT6 803 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 CALML5Q9NZT1 146 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 ERVK-18Q9QC07 812 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 REV1Q9UBZ9 1251 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 SEC14L3Q9UDX4 400 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 PSORS1C1Q9UIG5 152 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 ENPP5Q9UJA9 477 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 NDRG2Q9UN36 371 aaKnown RBP9.23□□□□□ -0.93
USP39-214ENST00000474572 CYP8B1Q9UNU6 501 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 LIPT1Q9Y234 373 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 SLC22A7Q9Y694 548 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 ZNF780BQ9Y6R6 833 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 CACNA1IQ9P0X4 2223 aa9.23□□□□□ -0.93
USP39-214ENST00000474572 ARHGEF17Q96PE2 2063 aaPredicted RBP9.22□□□□□ -0.93
USP39-214ENST00000474572 MYO9BQ13459 2157 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 F5P12259 2224 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 TRBV23OR9-2A0A075B6M9 112 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 A0A0J9YVX5 310 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 TRBV4-1A0A0J9YWV2 114 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 A0A1W2PRQ8 180 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 GSAPA4D1B5 854 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 OR5K3A6NET4 321 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 H0YGG7 62 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 RGS10O43665 173 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 B3GALT2O43825 422 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 SH3BP5O60239 455 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 NOL3O60936 208 aaKnown RBP9.22□□□□□ -0.93
USP39-214ENST00000474572 FAM20BO75063 409 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 GASTP01350 101 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 H1F0P07305 194 aaKnown RBP9.22□□□□□ -0.93
USP39-214ENST00000474572 CELA2BP08218 269 aaPredicted RBP9.22□□□□□ -0.93
USP39-214ENST00000474572 C8orf89P0DMQ9 161 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 NR2F1P10589 423 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 CDK4P11802 303 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 ALOX12P18054 663 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 CCNA2P20248 432 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 ZNF10P21506 573 aaPredicted RBP9.22□□□□□ -0.93
USP39-214ENST00000474572 CPN2P22792 545 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 FEN1P39748 380 aaKnown RBP9.22□□□□□ -0.93
USP39-214ENST00000474572 MC3RP41968 323 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 BLKP51451 505 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 CRISP1P54107 249 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 ARF3P61204 181 aaPredicted RBP9.22□□□□□ -0.93
USP39-214ENST00000474572 ALDH6A1Q02252 535 aaKnown RBP9.22□□□□□ -0.93
USP39-214ENST00000474572 NFATC3Q12968 1075 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 ILKQ13418 452 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 TDGQ13569 410 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 DGCR6Q14129 220 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 GAS6Q14393 721 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 GANABQ14697 944 aaKnown RBP9.22□□□□□ -0.93
USP39-214ENST00000474572 TBCEQ15813 527 aaPredicted RBP9.22□□□□□ -0.93
USP39-214ENST00000474572 SMN1Q16637 294 aaKnown RBP9.22□□□□□ -0.93
USP39-214ENST00000474572 LRIT3Q3SXY7 679 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 DCST1Q5T197 706 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.22□□□□□ -0.93
USP39-214ENST00000474572 FHL5Q5TD97 284 aa9.22□□□□□ -0.93
USP39-214ENST00000474572 UBE2UQ5VVX9 321 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms